miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 104641 0.67 0.708113
Target:  5'- cUGCGGcaCCucacGCUGGACaagGCCACCGu -3'
miRNA:   3'- cACGCCcaGGuu--CGAUCUG---CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 53854 0.68 0.698119
Target:  5'- -cGCGGGcacgaCC-AGC--GACGCCACCGc -3'
miRNA:   3'- caCGCCCa----GGuUCGauCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 46129 0.68 0.698119
Target:  5'- -aGCaGGUCCGcgAGCUccGACGCCAUgGg -3'
miRNA:   3'- caCGcCCAGGU--UCGAu-CUGCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 10414 0.68 0.698119
Target:  5'- gGUGCGGcugcgCCcAGgaGGACGCCugCGc -3'
miRNA:   3'- -CACGCCca---GGuUCgaUCUGCGGugGC- -5'
25600 3' -58.2 NC_005337.1 + 77145 0.68 0.688069
Target:  5'- --aCGGcGUCCAGGCUGGcgGCGaCCACgGg -3'
miRNA:   3'- cacGCC-CAGGUUCGAUC--UGC-GGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 1079 0.68 0.674938
Target:  5'- cUGCGGGaCgGAGCgGGcuacagccggcgcaGCGCCGCCGc -3'
miRNA:   3'- cACGCCCaGgUUCGaUC--------------UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 45030 0.69 0.62099
Target:  5'- -aGCGuGGacugccgcacgaugcUCCGcaAGCUGGGCGCCgGCCGg -3'
miRNA:   3'- caCGC-CC---------------AGGU--UCGAUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 59298 0.69 0.616914
Target:  5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3'
miRNA:   3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 60882 0.71 0.469045
Target:  5'- cUGCGGGUgCGGGCgcgccgAGuACGCCuCCGa -3'
miRNA:   3'- cACGCCCAgGUUCGa-----UC-UGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 66571 0.71 0.478409
Target:  5'- -cGaCGGGUCCGAGaUAGACGCCcaggagacgGCCu -3'
miRNA:   3'- caC-GCCCAGGUUCgAUCUGCGG---------UGGc -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 131381 0.71 0.507034
Target:  5'- -gGaCGuGGUCUGcAGCcGGACGCCGCCGg -3'
miRNA:   3'- caC-GC-CCAGGU-UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 38072 0.73 0.397796
Target:  5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3'
miRNA:   3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 38651 0.74 0.349131
Target:  5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3'
miRNA:   3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 36756 0.74 0.341444
Target:  5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3'
miRNA:   3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 116441 0.75 0.304861
Target:  5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3'
miRNA:   3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 33676 0.66 0.803038
Target:  5'- -aGCGaGGcgCCgAGGCcggcGGGCGCCACCu -3'
miRNA:   3'- caCGC-CCa-GG-UUCGa---UCUGCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.