miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 38072 0.73 0.397796
Target:  5'- cGUGacCGGGUCCG---UGGGCGCCACCa -3'
miRNA:   3'- -CAC--GCCCAGGUucgAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 83098 0.73 0.397796
Target:  5'- -aGCGGGUgacgauggCCAGGUUGGACcCCACCu -3'
miRNA:   3'- caCGCCCA--------GGUUCGAUCUGcGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 38651 0.74 0.349131
Target:  5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3'
miRNA:   3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 36756 0.74 0.341444
Target:  5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3'
miRNA:   3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 116441 0.75 0.304861
Target:  5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3'
miRNA:   3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 107162 0.7 0.526516
Target:  5'- -cGCGuGG-CCAAGCggcugcuggAGAUGCCGCUGg -3'
miRNA:   3'- caCGC-CCaGGUUCGa--------UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 74464 0.7 0.536363
Target:  5'- -gGCGGGUUCGAcgucucGCUGGACGCguaCAUCGu -3'
miRNA:   3'- caCGCCCAGGUU------CGAUCUGCG---GUGGC- -5'
25600 3' -58.2 NC_005337.1 + 117288 0.69 0.627108
Target:  5'- -gGCgGGGUCCcgcgugcugGAGgUGGACGCCuCCGc -3'
miRNA:   3'- caCG-CCCAGG---------UUCgAUCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 44657 0.69 0.62099
Target:  5'- -aGCGGGcgcuacgugggcgacUCCGAGaUAGGCGUgGCCGa -3'
miRNA:   3'- caCGCCC---------------AGGUUCgAUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 57279 0.69 0.616914
Target:  5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3'
miRNA:   3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 59901 0.69 0.613858
Target:  5'- -aGCGGGUCCcGGa-AGACccgcgugcugcccaGCCGCCGg -3'
miRNA:   3'- caCGCCCAGGuUCgaUCUG--------------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 51538 0.69 0.606732
Target:  5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3'
miRNA:   3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 131211 0.69 0.596568
Target:  5'- -cGCGGaGUCCGcGCUAGcCGCCGgUGu -3'
miRNA:   3'- caCGCC-CAGGUuCGAUCuGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 93263 0.69 0.596568
Target:  5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3'
miRNA:   3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 116010 0.7 0.56626
Target:  5'- cGUGCGGcucaCCGAGCaggUGGACGUgACCGu -3'
miRNA:   3'- -CACGCCca--GGUUCG---AUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36147 0.7 0.55624
Target:  5'- cGUGCGGGUCCAuGCUc-ACcCCGCUGc -3'
miRNA:   3'- -CACGCCCAGGUuCGAucUGcGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.