miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 57279 0.69 0.616914
Target:  5'- -cGCGGGgCCGgcgcgcgcGGCUGcGGCGCCGCUc -3'
miRNA:   3'- caCGCCCaGGU--------UCGAU-CUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 131211 0.69 0.596568
Target:  5'- -cGCGGaGUCCGcGCUAGcCGCCGgUGu -3'
miRNA:   3'- caCGCC-CAGGUuCGAUCuGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 67340 0.71 0.507034
Target:  5'- -cGCGcGUCCGGGUccGugGCCACCa -3'
miRNA:   3'- caCGCcCAGGUUCGauCugCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 36756 0.74 0.341444
Target:  5'- cUGCGGGcccUCCAGGCUGcGCGCCAUg- -3'
miRNA:   3'- cACGCCC---AGGUUCGAUcUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 107445 0.68 0.688069
Target:  5'- -aGCuGGacucguaCAAGCUGGACGCCAUCu -3'
miRNA:   3'- caCGcCCag-----GUUCGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 25064 0.68 0.657681
Target:  5'- cGUGCGGGcggcguucgUCAAGCUGcgcGACGCCGagcuCCGc -3'
miRNA:   3'- -CACGCCCa--------GGUUCGAU---CUGCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 116441 0.75 0.304861
Target:  5'- -gGCGGGUCCGAGaaggAGAuCGCCGCgCGc -3'
miRNA:   3'- caCGCCCAGGUUCga--UCU-GCGGUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 117012 0.68 0.647499
Target:  5'- cGUGCGccaGG-CCAcGCUccGGGCGCUGCCGa -3'
miRNA:   3'- -CACGC---CCaGGUuCGA--UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 88534 0.78 0.213319
Target:  5'- -cGCGGGgCCGuGCUAGACGgCGCCGu -3'
miRNA:   3'- caCGCCCaGGUuCGAUCUGCgGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 93263 0.69 0.596568
Target:  5'- -gGCGGGcCuCAAGCgGGACauccugGCCGCCGu -3'
miRNA:   3'- caCGCCCaG-GUUCGaUCUG------CGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 44657 0.69 0.62099
Target:  5'- -aGCGGGcgcuacgugggcgacUCCGAGaUAGGCGUgGCCGa -3'
miRNA:   3'- caCGCCC---------------AGGUUCgAUCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 131381 0.71 0.507034
Target:  5'- -gGaCGuGGUCUGcAGCcGGACGCCGCCGg -3'
miRNA:   3'- caC-GC-CCAGGU-UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 118507 0.72 0.459775
Target:  5'- cGUGCGGGUgaCCGgcgucgugucGGC-GGAUGCCAUCGg -3'
miRNA:   3'- -CACGCCCA--GGU----------UCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 38651 0.74 0.349131
Target:  5'- -aGCGGGcCCGcGCccacGGACGCCGCCa -3'
miRNA:   3'- caCGCCCaGGUuCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 119873 0.67 0.708113
Target:  5'- -gGCGcGGUUCAGcgccggcggacuGCUGGACGUCAUCa -3'
miRNA:   3'- caCGC-CCAGGUU------------CGAUCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 86000 0.68 0.688069
Target:  5'- -cGCGGGUCCAGccGCaGGuGCGUCacGCCGa -3'
miRNA:   3'- caCGCCCAGGUU--CGaUC-UGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 1079 0.68 0.674938
Target:  5'- cUGCGGGaCgGAGCgGGcuacagccggcgcaGCGCCGCCGc -3'
miRNA:   3'- cACGCCCaGgUUCGaUC--------------UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 58657 0.68 0.657681
Target:  5'- -cGCGGGacacgcgcgCCAAGCUcguGGACGCCuucaacGCCu -3'
miRNA:   3'- caCGCCCa--------GGUUCGA---UCUGCGG------UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.