miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 70666 0.68 0.667842
Target:  5'- uUGCGGGgcgcaaCAGGCaccuUGGA-GCCGCCGg -3'
miRNA:   3'- cACGCCCag----GUUCG----AUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 36147 0.7 0.55624
Target:  5'- cGUGCGGGUCCAuGCUc-ACcCCGCUGc -3'
miRNA:   3'- -CACGCCCAGGUuCGAucUGcGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 66072 0.67 0.747359
Target:  5'- -gGCGGGcCCGcAGC--GGCGCCcCCGg -3'
miRNA:   3'- caCGCCCaGGU-UCGauCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 105196 0.7 0.536363
Target:  5'- -cGCgGGGUCCGcGGcCUGGGgGCCGCUGa -3'
miRNA:   3'- caCG-CCCAGGU-UC-GAUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 33676 0.66 0.803038
Target:  5'- -aGCGaGGcgCCgAGGCcggcGGGCGCCACCu -3'
miRNA:   3'- caCGC-CCa-GG-UUCGa---UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 108546 0.7 0.576325
Target:  5'- gGUGCGGGgcgcgcgCCugacGCUGGcgGCGCgGCCGg -3'
miRNA:   3'- -CACGCCCa------GGuu--CGAUC--UGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 51538 0.69 0.606732
Target:  5'- cGUGCGGcugCCGGGcCUGGAgGCCGCg- -3'
miRNA:   3'- -CACGCCca-GGUUC-GAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 31423 0.66 0.775772
Target:  5'- aGUGCGGGUgCGuGC-GGAaGCUGCCGu -3'
miRNA:   3'- -CACGCCCAgGUuCGaUCUgCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 85393 0.66 0.774842
Target:  5'- gGUGCGuGGUcuggccgCCGGGCggGGACGCgCACuCGu -3'
miRNA:   3'- -CACGC-CCA-------GGUUCGa-UCUGCG-GUG-GC- -5'
25600 3' -58.2 NC_005337.1 + 771 0.66 0.766417
Target:  5'- -gGCGG--CCAuguGCUGcGCGCCGCCGa -3'
miRNA:   3'- caCGCCcaGGUu--CGAUcUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 35946 0.67 0.756943
Target:  5'- -cGCaGGcagcaCCGGGUagGGACGCCGCCGc -3'
miRNA:   3'- caCGcCCa----GGUUCGa-UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 9578 0.66 0.785
Target:  5'- uGUGCGaGGucUCCGGGUUcgcguGAuUGCCGCCGg -3'
miRNA:   3'- -CACGC-CC--AGGUUCGAu----CU-GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 86277 0.67 0.724951
Target:  5'- -cGCGGaUCCAGGCcacgcagugcggccUGGACGCguCCGc -3'
miRNA:   3'- caCGCCcAGGUUCG--------------AUCUGCGguGGC- -5'
25600 3' -58.2 NC_005337.1 + 130748 0.67 0.708113
Target:  5'- -cGCuGGGUCCGAcGUgugcaccgUGGACGcCCGCCa -3'
miRNA:   3'- caCG-CCCAGGUU-CG--------AUCUGC-GGUGGc -5'
25600 3' -58.2 NC_005337.1 + 86000 0.68 0.688069
Target:  5'- -cGCGGGUCCAGccGCaGGuGCGUCacGCCGa -3'
miRNA:   3'- caCGCCCAGGUU--CGaUC-UGCGG--UGGC- -5'
25600 3' -58.2 NC_005337.1 + 40552 0.68 0.677975
Target:  5'- -gGCGGGUC---GCUGGAgGCCGCg- -3'
miRNA:   3'- caCGCCCAGguuCGAUCUgCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 25064 0.68 0.657681
Target:  5'- cGUGCGGGcggcguucgUCAAGCUGcgcGACGCCGagcuCCGc -3'
miRNA:   3'- -CACGCCCa--------GGUUCGAU---CUGCGGU----GGC- -5'
25600 3' -58.2 NC_005337.1 + 117288 0.69 0.627108
Target:  5'- -gGCgGGGUCCcgcgugcugGAGgUGGACGCCuCCGc -3'
miRNA:   3'- caCG-CCCAGG---------UUCgAUCUGCGGuGGC- -5'
25600 3' -58.2 NC_005337.1 + 133642 0.66 0.785
Target:  5'- cGUGCaGGacgucgCCGcGCUGGACGCCgACgCGg -3'
miRNA:   3'- -CACGcCCa-----GGUuCGAUCUGCGG-UG-GC- -5'
25600 3' -58.2 NC_005337.1 + 68214 0.67 0.754079
Target:  5'- cUGCGGGcccgccugacggcgUCCGGGUUccGGAgCGCgGCCGg -3'
miRNA:   3'- cACGCCC--------------AGGUUCGA--UCU-GCGgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.