miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 3' -58.2 NC_005337.1 + 101471 0.69 0.606732
Target:  5'- aGUGCGuGGaCCAGGCgcAGGCGCUGCUc -3'
miRNA:   3'- -CACGC-CCaGGUUCGa-UCUGCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 29591 0.69 0.596568
Target:  5'- -gGCGGuGUCCGAcGC-GGACGCCAUg- -3'
miRNA:   3'- caCGCC-CAGGUU-CGaUCUGCGGUGgc -5'
25600 3' -58.2 NC_005337.1 + 42550 0.67 0.747359
Target:  5'- cUGCGGGcgCUGgugcggcugcGGCUGGAgGCCGCgGg -3'
miRNA:   3'- cACGCCCa-GGU----------UCGAUCUgCGGUGgC- -5'
25600 3' -58.2 NC_005337.1 + 127792 0.71 0.487865
Target:  5'- gGUGCGGGUgCu-GgUGGACGCCGgCGc -3'
miRNA:   3'- -CACGCCCAgGuuCgAUCUGCGGUgGC- -5'
25600 3' -58.2 NC_005337.1 + 121712 0.67 0.718043
Target:  5'- -cGCGGGg--AGGCggacaAGACGCCGCUGc -3'
miRNA:   3'- caCGCCCaggUUCGa----UCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 44417 0.73 0.381097
Target:  5'- -cGUGGGUCUgccgGAGCgccgGGAgcCGCCGCCGg -3'
miRNA:   3'- caCGCCCAGG----UUCGa---UCU--GCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 59298 0.69 0.616914
Target:  5'- cUGCGGGUCgGAGau-GAUGCgACUGg -3'
miRNA:   3'- cACGCCCAGgUUCgauCUGCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 45030 0.69 0.62099
Target:  5'- -aGCGuGGacugccgcacgaugcUCCGcaAGCUGGGCGCCgGCCGg -3'
miRNA:   3'- caCGC-CC---------------AGGU--UCGAUCUGCGG-UGGC- -5'
25600 3' -58.2 NC_005337.1 + 127583 0.67 0.737675
Target:  5'- -gGCGGG-CgcAGCcgUGGACGUCGCCGa -3'
miRNA:   3'- caCGCCCaGguUCG--AUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 82977 0.67 0.747359
Target:  5'- -aGCGGGUgCGAGUUGcucACGCUcacGCCGg -3'
miRNA:   3'- caCGCCCAgGUUCGAUc--UGCGG---UGGC- -5'
25600 3' -58.2 NC_005337.1 + 48641 0.67 0.737675
Target:  5'- -gGCGGacgCCAgcgcgcAGCUGGACGCCgugaugaagGCCGu -3'
miRNA:   3'- caCGCCca-GGU------UCGAUCUGCGG---------UGGC- -5'
25600 3' -58.2 NC_005337.1 + 30244 0.67 0.737675
Target:  5'- uGUGCGGGU-CAGGCgcAGGCGCgGgCa -3'
miRNA:   3'- -CACGCCCAgGUUCGa-UCUGCGgUgGc -5'
25600 3' -58.2 NC_005337.1 + 42867 0.67 0.736702
Target:  5'- cUGCGugacgaaGGUgCugGAGCgGGGCGCCGCCGa -3'
miRNA:   3'- cACGC-------CCAgG--UUCGaUCUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 45534 0.67 0.7279
Target:  5'- -cGuCGGGagCCGGuGCUGGagucgGCGCCGCCGu -3'
miRNA:   3'- caC-GCCCa-GGUU-CGAUC-----UGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 68214 0.67 0.754079
Target:  5'- cUGCGGGcccgccugacggcgUCCGGGUUccGGAgCGCgGCCGg -3'
miRNA:   3'- cACGCCC--------------AGGUUCGA--UCU-GCGgUGGC- -5'
25600 3' -58.2 NC_005337.1 + 133642 0.66 0.785
Target:  5'- cGUGCaGGacgucgCCGcGCUGGACGCCgACgCGg -3'
miRNA:   3'- -CACGcCCa-----GGUuCGAUCUGCGG-UG-GC- -5'
25600 3' -58.2 NC_005337.1 + 51169 0.66 0.803038
Target:  5'- gGUG-GGGUCCAAcCUGGccauCGUCACCc -3'
miRNA:   3'- -CACgCCCAGGUUcGAUCu---GCGGUGGc -5'
25600 3' -58.2 NC_005337.1 + 124925 0.66 0.794092
Target:  5'- -cGCGcGUCCAGGCgacGCGUCAUCGc -3'
miRNA:   3'- caCGCcCAGGUUCGaucUGCGGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 117841 0.67 0.737675
Target:  5'- -cGCGGGUUCAGcacguGCgAGAUGaUCACCGg -3'
miRNA:   3'- caCGCCCAGGUU-----CGaUCUGC-GGUGGC- -5'
25600 3' -58.2 NC_005337.1 + 14706 0.66 0.794092
Target:  5'- gGUGCGGGUaCCu-GCUcuccacGACGCCcaucGCCa -3'
miRNA:   3'- -CACGCCCA-GGuuCGAu-----CUGCGG----UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.