Results 1 - 20 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 90842 | 0.66 | 0.872983 |
Target: 5'- aUCAGGUugaugcuggacaGCGucuCCaGGACCAGCGCg -3' miRNA: 3'- aGGUCCG------------CGCuauGGaCUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 9924 | 0.66 | 0.880302 |
Target: 5'- -gCGGGCcaGCGcgGCCUGAugCGaucGCGCc -3' miRNA: 3'- agGUCCG--CGCuaUGGACUugGU---CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 52975 | 0.66 | 0.894247 |
Target: 5'- cUCCGcGGagauGCGGUugUUGAGCguGUACg -3' miRNA: 3'- -AGGU-CCg---CGCUAugGACUUGguCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 41810 | 0.66 | 0.887392 |
Target: 5'- gUCgAGGCGUuc-GCCagGAACCGGCGg -3' miRNA: 3'- -AGgUCCGCGcuaUGGa-CUUGGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 62216 | 0.66 | 0.872983 |
Target: 5'- uUCC-GGCGgGAcacggggaUGCCgauguGCCGGCACa -3' miRNA: 3'- -AGGuCCGCgCU--------AUGGacu--UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 69225 | 0.66 | 0.887392 |
Target: 5'- uUCCAGaacguGCGCGcgcGCCUGGACguGC-Cg -3' miRNA: 3'- -AGGUC-----CGCGCua-UGGACUUGguCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 95839 | 0.66 | 0.85689 |
Target: 5'- cUCGGGCGUGAUGacgcgccCCUGGucguccACCAGCc- -3' miRNA: 3'- aGGUCCGCGCUAU-------GGACU------UGGUCGug -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 18768 | 0.66 | 0.857678 |
Target: 5'- cUCCAGGuCGUcg-ACCUcgcGAgGCCGGCGCa -3' miRNA: 3'- -AGGUCC-GCGcuaUGGA---CU-UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 10159 | 0.66 | 0.865439 |
Target: 5'- -aCAGGCGCGuccaGCCcuuGCCGGCGa -3' miRNA: 3'- agGUCCGCGCua--UGGacuUGGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 126940 | 0.66 | 0.894247 |
Target: 5'- -gCGGGCGCGG-ACgUGAACgC-GCGCg -3' miRNA: 3'- agGUCCGCGCUaUGgACUUG-GuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 17793 | 0.66 | 0.894247 |
Target: 5'- cUCCAGGCGCGucugucGCgUGAAguacuCCucgauGCGCg -3' miRNA: 3'- -AGGUCCGCGCua----UGgACUU-----GGu----CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 43688 | 0.66 | 0.872983 |
Target: 5'- cCCGGGCG-GAcGCCgacgacGGACCGGC-Cg -3' miRNA: 3'- aGGUCCGCgCUaUGGa-----CUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 127788 | 0.66 | 0.865439 |
Target: 5'- gCguGGUGCgGGUGCUggugGAcGCCGGCGCu -3' miRNA: 3'- aGguCCGCG-CUAUGGa---CU-UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 23785 | 0.66 | 0.865439 |
Target: 5'- gCCAcgucgagcuGGCcCGGUACCUGcGCC-GCACg -3' miRNA: 3'- aGGU---------CCGcGCUAUGGACuUGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 58584 | 0.66 | 0.855308 |
Target: 5'- cUCC-GGCGCGGagUACUUGGccguggucauguucACCAcGCACu -3' miRNA: 3'- -AGGuCCGCGCU--AUGGACU--------------UGGU-CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 83962 | 0.66 | 0.870743 |
Target: 5'- gUCCGcgcagggcagcggcGGCGCGGgcggGCacguCUGGGCCuGCACg -3' miRNA: 3'- -AGGU--------------CCGCGCUa---UG----GACUUGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 110246 | 0.66 | 0.8561 |
Target: 5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3' miRNA: 3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 65984 | 0.66 | 0.880302 |
Target: 5'- gCCucuGGUGCGAgGCCgugcgucccgUGGGCgAGCGCg -3' miRNA: 3'- aGGu--CCGCGCUaUGG----------ACUUGgUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 877 | 0.66 | 0.894247 |
Target: 5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3' miRNA: 3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 122534 | 0.66 | 0.887392 |
Target: 5'- cCCuGGCGCGGcgacgcGCgCUGcAGCCGGUGCu -3' miRNA: 3'- aGGuCCGCGCUa-----UG-GAC-UUGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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