miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 132535 0.66 0.857678
Target:  5'- gUCCGGGCGg---GCCUGGACaucgacGCGCu -3'
miRNA:   3'- -AGGUCCGCgcuaUGGACUUGgu----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 50599 0.66 0.880302
Target:  5'- cCCAGacCGCGAUcgacgACCUGcGCCGGCuGCu -3'
miRNA:   3'- aGGUCc-GCGCUA-----UGGACuUGGUCG-UG- -5'
25600 5' -55.7 NC_005337.1 + 55841 0.67 0.83315
Target:  5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3'
miRNA:   3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31917 0.67 0.841526
Target:  5'- gCCAGGUGCGcgGCCUcggGGGCaugucgaAGCAg -3'
miRNA:   3'- aGGUCCGCGCuaUGGA---CUUGg------UCGUg -5'
25600 5' -55.7 NC_005337.1 + 114361 0.67 0.849705
Target:  5'- aCCAcaCGCccUACCUGGuCCAGCACg -3'
miRNA:   3'- aGGUccGCGcuAUGGACUuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87912 0.67 0.815837
Target:  5'- -gCuGGCGC---GCCUGcGCCGGCGCu -3'
miRNA:   3'- agGuCCGCGcuaUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 125627 0.67 0.815837
Target:  5'- gCCAGGCGCuGAaGCU----CCGGCACg -3'
miRNA:   3'- aGGUCCGCG-CUaUGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 15210 0.67 0.813178
Target:  5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24386 0.67 0.815837
Target:  5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3'
miRNA:   3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 77072 0.67 0.846458
Target:  5'- uUCgCGGGCGCGGcACCcguacgccgaguaGGugCGGCACa -3'
miRNA:   3'- -AG-GUCCGCGCUaUGGa------------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 98050 0.67 0.849705
Target:  5'- gUCCGGGaGCGc-GCCgcGGCCGGCGCa -3'
miRNA:   3'- -AGGUCCgCGCuaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46011 0.67 0.849705
Target:  5'- cUCCGcGGCGCcc-GCCggcGcGCCGGCACg -3'
miRNA:   3'- -AGGU-CCGCGcuaUGGa--CuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 122411 0.67 0.849705
Target:  5'- -gCGGcGCGCGGcGCCUguccgcgccGAugCGGCACa -3'
miRNA:   3'- agGUC-CGCGCUaUGGA---------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 62641 0.67 0.825449
Target:  5'- gCCAGGCGCugcuggaagacguuGGccggcauggccacguUGCCguuGACCAGCACg -3'
miRNA:   3'- aGGUCCGCG--------------CU---------------AUGGac-UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100809 0.67 0.824584
Target:  5'- gCCuGGCGCacgucGUGCCUGAgaACUcGCGCa -3'
miRNA:   3'- aGGuCCGCGc----UAUGGACU--UGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 83902 0.67 0.849705
Target:  5'- gCCAGGCGCccGUGCCcGGgcccgucuccGCCGGCGu -3'
miRNA:   3'- aGGUCCGCGc-UAUGGaCU----------UGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 123071 0.67 0.849705
Target:  5'- gCCgagaAGG-GCGAUAUCgUGAACCAGCu- -3'
miRNA:   3'- aGG----UCCgCGCUAUGG-ACUUGGUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.