Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 77371 | 0.67 | 0.841526 |
Target: 5'- cCCGGauccCGCGGUGCCgcaacaccAGCCGGCGCc -3' miRNA: 3'- aGGUCc---GCGCUAUGGac------UUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 49923 | 0.67 | 0.841526 |
Target: 5'- -aCAGGCGCGAgcGCggGGA-CAGCACg -3' miRNA: 3'- agGUCCGCGCUa-UGgaCUUgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 123491 | 0.67 | 0.841526 |
Target: 5'- gUCCGGGa-CGGUcguccGCCUGAcgaugGCCGGUGCg -3' miRNA: 3'- -AGGUCCgcGCUA-----UGGACU-----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 46240 | 0.67 | 0.840698 |
Target: 5'- aUCAGcGUgGCGAgcgugACCUGGaugguggGCCGGCACa -3' miRNA: 3'- aGGUC-CG-CGCUa----UGGACU-------UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 6602 | 0.67 | 0.840698 |
Target: 5'- gCCAGGUcgGCGcccAUCUGGaugaggcGCCGGCACg -3' miRNA: 3'- aGGUCCG--CGCua-UGGACU-------UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 86186 | 0.67 | 0.819357 |
Target: 5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3' miRNA: 3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 24386 | 0.67 | 0.815837 |
Target: 5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3' miRNA: 3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 5537 | 0.67 | 0.814952 |
Target: 5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3' miRNA: 3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 15210 | 0.67 | 0.813178 |
Target: 5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3' miRNA: 3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 55841 | 0.67 | 0.83315 |
Target: 5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3' miRNA: 3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 108549 | 0.68 | 0.769677 |
Target: 5'- gCgGGGCGCGc-GCCUGAcgcuGgCGGCGCg -3' miRNA: 3'- aGgUCCGCGCuaUGGACU----UgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 2209 | 0.68 | 0.769677 |
Target: 5'- -gCGGGCGCG--GCCcGGGCCgcgAGCGCg -3' miRNA: 3'- agGUCCGCGCuaUGGaCUUGG---UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 11421 | 0.68 | 0.788589 |
Target: 5'- -gCAGGCGCGcgGgCUcu-CCAGCACc -3' miRNA: 3'- agGUCCGCGCuaUgGAcuuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 85873 | 0.68 | 0.769677 |
Target: 5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3' miRNA: 3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 30275 | 0.68 | 0.779202 |
Target: 5'- gUCCAcGGCGCGcaggugagcGCCagGAcgGCCGGCACc -3' miRNA: 3'- -AGGU-CCGCGCua-------UGGa-CU--UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 53267 | 0.68 | 0.79783 |
Target: 5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3' miRNA: 3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 11624 | 0.68 | 0.806916 |
Target: 5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3' miRNA: 3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 117515 | 0.68 | 0.806916 |
Target: 5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3' miRNA: 3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 65419 | 0.68 | 0.78952 |
Target: 5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3' miRNA: 3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 42188 | 0.68 | 0.806916 |
Target: 5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3' miRNA: 3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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