Results 81 - 100 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 53267 | 0.68 | 0.79783 |
Target: 5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3' miRNA: 3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 42188 | 0.68 | 0.806916 |
Target: 5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3' miRNA: 3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 117515 | 0.68 | 0.806916 |
Target: 5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3' miRNA: 3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 11624 | 0.68 | 0.806916 |
Target: 5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3' miRNA: 3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 85873 | 0.68 | 0.769677 |
Target: 5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3' miRNA: 3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 77150 | 0.68 | 0.760025 |
Target: 5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3' miRNA: 3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 9639 | 0.68 | 0.760025 |
Target: 5'- cUCgCAGaGCGCGAUGCUgagcAGCCcGCGCg -3' miRNA: 3'- -AG-GUC-CGCGCUAUGGac--UUGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 16906 | 0.69 | 0.740379 |
Target: 5'- gUCCAGGaucu---UCUGGACCAGCACg -3' miRNA: 3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 31430 | 0.69 | 0.730403 |
Target: 5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3' miRNA: 3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 14702 | 0.69 | 0.724375 |
Target: 5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3' miRNA: 3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 91192 | 0.69 | 0.72034 |
Target: 5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3' miRNA: 3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 101200 | 0.69 | 0.754177 |
Target: 5'- gUCgCuGGUGCGAUGCCUGAuggcguccggguucgACCucugggccaucgAGCGCg -3' miRNA: 3'- -AG-GuCCGCGCUAUGGACU---------------UGG------------UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 87794 | 0.69 | 0.710197 |
Target: 5'- gCCaAGGCGCGGcugcUGCCcggGAGCUcgcGGCGCg -3' miRNA: 3'- aGG-UCCGCGCU----AUGGa--CUUGG---UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 52573 | 0.69 | 0.709179 |
Target: 5'- cUCCGcggggacGGCGCGGcgGCgCUGGcggccaagcagaGCCAGCACa -3' miRNA: 3'- -AGGU-------CCGCGCUa-UG-GACU------------UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 74777 | 0.69 | 0.737396 |
Target: 5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3' miRNA: 3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 120777 | 0.7 | 0.669035 |
Target: 5'- aUCCGGGUGaccggGAUGCagCUGGAgCGGCGCg -3' miRNA: 3'- -AGGUCCGCg----CUAUG--GACUUgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 110478 | 0.7 | 0.699986 |
Target: 5'- cCCGugcGGCGCaGGUACC-GGGCCAGCuCg -3' miRNA: 3'- aGGU---CCGCG-CUAUGGaCUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 115145 | 0.7 | 0.669035 |
Target: 5'- cCCGGGCuuCGAccACCUGGagauGCCGGCGCc -3' miRNA: 3'- aGGUCCGc-GCUa-UGGACU----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 35337 | 0.7 | 0.689716 |
Target: 5'- cCCAGGCGUGcGUggcGCCgaagugGAGCCGGCuCa -3' miRNA: 3'- aGGUCCGCGC-UA---UGGa-----CUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 20667 | 0.7 | 0.69383 |
Target: 5'- aCCAGGUGUGGUGCUUGGuguacuaaucuuuuCCGGCu- -3' miRNA: 3'- aGGUCCGCGCUAUGGACUu-------------GGUCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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