Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 54246 | 0.71 | 0.606528 |
Target: 5'- gUCC-GGCGCGuccggGCCgGGugCGGCGCu -3' miRNA: 3'- -AGGuCCGCGCua---UGGaCUugGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 37083 | 0.71 | 0.584728 |
Target: 5'- aCCAuGGCGCGGUcgagcucGCCgGAGCgCAGCAg -3' miRNA: 3'- aGGU-CCGCGCUA-------UGGaCUUG-GUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 3036 | 0.71 | 0.627371 |
Target: 5'- gUCCuuGCGCGA--CUcGAACCAGCGCa -3' miRNA: 3'- -AGGucCGCGCUauGGaCUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 72028 | 0.71 | 0.585763 |
Target: 5'- aCCuGGaguuCGCG-UACCUGuGCCGGCACa -3' miRNA: 3'- aGGuCC----GCGCuAUGGACuUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 8693 | 0.71 | 0.627371 |
Target: 5'- gCCucGGCGuCGuagauGUACCUG-GCCAGCACg -3' miRNA: 3'- aGGu-CCGC-GC-----UAUGGACuUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 9653 | 0.71 | 0.637803 |
Target: 5'- cUCCggAGGCGCGcaAUGCCU---CCAGCGCc -3' miRNA: 3'- -AGG--UCCGCGC--UAUGGAcuuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 68566 | 0.71 | 0.637803 |
Target: 5'- gCCAuGGCGCGGaGCUc-GGCCAGCACc -3' miRNA: 3'- aGGU-CCGCGCUaUGGacUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 128765 | 0.71 | 0.637803 |
Target: 5'- gCCGGcGCGCGA-ACCUGG--UAGCACg -3' miRNA: 3'- aGGUC-CGCGCUaUGGACUugGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 80134 | 0.7 | 0.688686 |
Target: 5'- aCCGGGCGCGAcacgcggcucccgUACuacugCUGGuacgggccguGCCGGCGCg -3' miRNA: 3'- aGGUCCGCGCU-------------AUG-----GACU----------UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 82196 | 0.7 | 0.670073 |
Target: 5'- gCCGGGCGCGcacgGCCggcggucgaagagccGAACCAGCu- -3' miRNA: 3'- aGGUCCGCGCua--UGGa--------------CUUGGUCGug -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 35337 | 0.7 | 0.689716 |
Target: 5'- cCCAGGCGUGcGUggcGCCgaagugGAGCCGGCuCa -3' miRNA: 3'- aGGUCCGCGC-UA---UGGa-----CUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 20667 | 0.7 | 0.69383 |
Target: 5'- aCCAGGUGUGGUGCUUGGuguacuaaucuuuuCCGGCu- -3' miRNA: 3'- aGGUCCGCGCUAUGGACUu-------------GGUCGug -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 115145 | 0.7 | 0.669035 |
Target: 5'- cCCGGGCuuCGAccACCUGGagauGCCGGCGCc -3' miRNA: 3'- aGGUCCGc-GCUa-UGGACU----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 110478 | 0.7 | 0.699986 |
Target: 5'- cCCGugcGGCGCaGGUACC-GGGCCAGCuCg -3' miRNA: 3'- aGGU---CCGCG-CUAUGGaCUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 120777 | 0.7 | 0.669035 |
Target: 5'- aUCCGGGUGaccggGAUGCagCUGGAgCGGCGCg -3' miRNA: 3'- -AGGUCCGCg----CUAUG--GACUUgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 91192 | 0.69 | 0.72034 |
Target: 5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3' miRNA: 3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 14702 | 0.69 | 0.724375 |
Target: 5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3' miRNA: 3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 74777 | 0.69 | 0.737396 |
Target: 5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3' miRNA: 3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 16906 | 0.69 | 0.740379 |
Target: 5'- gUCCAGGaucu---UCUGGACCAGCACg -3' miRNA: 3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 31430 | 0.69 | 0.730403 |
Target: 5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3' miRNA: 3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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