miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 80341 1.11 0.00182
Target:  5'- uUCCAGGCGCGAUACCUGAACCAGCACg -3'
miRNA:   3'- -AGGUCCGCGCUAUGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 37386 0.81 0.17805
Target:  5'- aCCAGGCGCGAcACCgugucgaaGAugCAGCACu -3'
miRNA:   3'- aGGUCCGCGCUaUGGa-------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38996 0.79 0.240848
Target:  5'- gCCGGGCGCuggggaaAUACCUGGGCCcGCGCg -3'
miRNA:   3'- aGGUCCGCGc------UAUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 15366 0.78 0.285418
Target:  5'- uUCCAGGCGCGcacucgGUACCUGGGaguGCACg -3'
miRNA:   3'- -AGGUCCGCGC------UAUGGACUUgguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 58875 0.76 0.336247
Target:  5'- gCCGaGCGCGGUACgUGAACguGCACu -3'
miRNA:   3'- aGGUcCGCGCUAUGgACUUGguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 1662 0.76 0.359968
Target:  5'- cUCgCAGGCGCGucgcgaACCUGAACCgcagccgcAGCGCg -3'
miRNA:   3'- -AG-GUCCGCGCua----UGGACUUGG--------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49299 0.76 0.359968
Target:  5'- cCCGGGCggaccgGCGAUACCUGGAggccauCCAGCGa -3'
miRNA:   3'- aGGUCCG------CGCUAUGGACUU------GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 101463 0.75 0.393369
Target:  5'- --gGGGCGCGAgUGCgUGGACCAGgCGCa -3'
miRNA:   3'- aggUCCGCGCU-AUGgACUUGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 106312 0.74 0.437843
Target:  5'- cUCCAGGUucCGGUGCUccucGAACCGGCGCa -3'
miRNA:   3'- -AGGUCCGc-GCUAUGGa---CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77008 0.73 0.475419
Target:  5'- gCCGGccccGCGCGGccccgUGCCcGAACCAGCGCc -3'
miRNA:   3'- aGGUC----CGCGCU-----AUGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 111130 0.73 0.514534
Target:  5'- -aCGGGCGUGAagagcaggaugUGCUUGAAgCGGCGCa -3'
miRNA:   3'- agGUCCGCGCU-----------AUGGACUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 57262 0.73 0.514534
Target:  5'- gUUCGGGCaCGggGCCgcgcgGGGCCGGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGa----CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 57520 0.73 0.522517
Target:  5'- uUCguGGCGCGcgucuuccuggGCCUGGACCGcauGCACg -3'
miRNA:   3'- -AGguCCGCGCua---------UGGACUUGGU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 122926 0.73 0.523518
Target:  5'- --aGGGCGCGAUG-CUGAACCcggugguGGCGCa -3'
miRNA:   3'- aggUCCGCGCUAUgGACUUGG-------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38514 0.72 0.53458
Target:  5'- cCCGGGCGC---GCCUGGugCAGgGCc -3'
miRNA:   3'- aGGUCCGCGcuaUGGACUugGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 50352 0.72 0.554894
Target:  5'- gCCcGGC-CGA-GCCUGGGCCAGCAg -3'
miRNA:   3'- aGGuCCGcGCUaUGGACUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 47990 0.72 0.554894
Target:  5'- gUCCAGGCcgcacuGCGugGCCUGGAUCcGCGCg -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 37083 0.71 0.584728
Target:  5'- aCCAuGGCGCGGUcgagcucGCCgGAGCgCAGCAg -3'
miRNA:   3'- aGGU-CCGCGCUA-------UGGaCUUG-GUCGUg -5'
25600 5' -55.7 NC_005337.1 + 72028 0.71 0.585763
Target:  5'- aCCuGGaguuCGCG-UACCUGuGCCGGCACa -3'
miRNA:   3'- aGGuCC----GCGCuAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 54246 0.71 0.606528
Target:  5'- gUCC-GGCGCGuccggGCCgGGugCGGCGCu -3'
miRNA:   3'- -AGGuCCGCGCua---UGGaCUugGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.