miRNA display CGI


Results 21 - 40 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 124443 0.71 0.606528
Target:  5'- -gCGGGUGCGggGCCUGccCCAuGCACu -3'
miRNA:   3'- agGUCCGCGCuaUGGACuuGGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 80092 0.71 0.606528
Target:  5'- gUCCGGuGCGCG-UGCCUGaAGCCgAGC-Ca -3'
miRNA:   3'- -AGGUC-CGCGCuAUGGAC-UUGG-UCGuG- -5'
25600 5' -55.7 NC_005337.1 + 8693 0.71 0.627371
Target:  5'- gCCucGGCGuCGuagauGUACCUG-GCCAGCACg -3'
miRNA:   3'- aGGu-CCGC-GC-----UAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 3036 0.71 0.627371
Target:  5'- gUCCuuGCGCGA--CUcGAACCAGCGCa -3'
miRNA:   3'- -AGGucCGCGCUauGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 35234 0.71 0.627371
Target:  5'- gUCAGGUcgGCG-UACCUGGcguCCAGCGCc -3'
miRNA:   3'- aGGUCCG--CGCuAUGGACUu--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9653 0.71 0.637803
Target:  5'- cUCCggAGGCGCGcaAUGCCU---CCAGCGCc -3'
miRNA:   3'- -AGG--UCCGCGC--UAUGGAcuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 68566 0.71 0.637803
Target:  5'- gCCAuGGCGCGGaGCUc-GGCCAGCACc -3'
miRNA:   3'- aGGU-CCGCGCUaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 128765 0.71 0.637803
Target:  5'- gCCGGcGCGCGA-ACCUGG--UAGCACg -3'
miRNA:   3'- aGGUC-CGCGCUaUGGACUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 120777 0.7 0.669035
Target:  5'- aUCCGGGUGaccggGAUGCagCUGGAgCGGCGCg -3'
miRNA:   3'- -AGGUCCGCg----CUAUG--GACUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 115145 0.7 0.669035
Target:  5'- cCCGGGCuuCGAccACCUGGagauGCCGGCGCc -3'
miRNA:   3'- aGGUCCGc-GCUa-UGGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 82196 0.7 0.670073
Target:  5'- gCCGGGCGCGcacgGCCggcggucgaagagccGAACCAGCu- -3'
miRNA:   3'- aGGUCCGCGCua--UGGa--------------CUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 80134 0.7 0.688686
Target:  5'- aCCGGGCGCGAcacgcggcucccgUACuacugCUGGuacgggccguGCCGGCGCg -3'
miRNA:   3'- aGGUCCGCGCU-------------AUG-----GACU----------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 35337 0.7 0.689716
Target:  5'- cCCAGGCGUGcGUggcGCCgaagugGAGCCGGCuCa -3'
miRNA:   3'- aGGUCCGCGC-UA---UGGa-----CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 20667 0.7 0.69383
Target:  5'- aCCAGGUGUGGUGCUUGGuguacuaaucuuuuCCGGCu- -3'
miRNA:   3'- aGGUCCGCGCUAUGGACUu-------------GGUCGug -5'
25600 5' -55.7 NC_005337.1 + 110478 0.7 0.699986
Target:  5'- cCCGugcGGCGCaGGUACC-GGGCCAGCuCg -3'
miRNA:   3'- aGGU---CCGCG-CUAUGGaCUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 52573 0.69 0.709179
Target:  5'- cUCCGcggggacGGCGCGGcgGCgCUGGcggccaagcagaGCCAGCACa -3'
miRNA:   3'- -AGGU-------CCGCGCUa-UG-GACU------------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87794 0.69 0.710197
Target:  5'- gCCaAGGCGCGGcugcUGCCcggGAGCUcgcGGCGCg -3'
miRNA:   3'- aGG-UCCGCGCU----AUGGa--CUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 14702 0.69 0.724375
Target:  5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3'
miRNA:   3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 31430 0.69 0.730403
Target:  5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.