miRNA display CGI


Results 41 - 60 of 130 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 74777 0.69 0.737396
Target:  5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3'
miRNA:   3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 16906 0.69 0.740379
Target:  5'- gUCCAGGaucu---UCUGGACCAGCACg -3'
miRNA:   3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 101200 0.69 0.754177
Target:  5'- gUCgCuGGUGCGAUGCCUGAuggcguccggguucgACCucugggccaucgAGCGCg -3'
miRNA:   3'- -AG-GuCCGCGCUAUGGACU---------------UGG------------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 51682 0.68 0.760025
Target:  5'- gCCGGGCGUGAcggacACCgucuccaugGAGauCCAGCGCg -3'
miRNA:   3'- aGGUCCGCGCUa----UGGa--------CUU--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9639 0.68 0.760025
Target:  5'- cUCgCAGaGCGCGAUGCUgagcAGCCcGCGCg -3'
miRNA:   3'- -AG-GUC-CGCGCUAUGGac--UUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77150 0.68 0.760025
Target:  5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 85873 0.68 0.769677
Target:  5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3'
miRNA:   3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 2209 0.68 0.769677
Target:  5'- -gCGGGCGCG--GCCcGGGCCgcgAGCGCg -3'
miRNA:   3'- agGUCCGCGCuaUGGaCUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 108549 0.68 0.769677
Target:  5'- gCgGGGCGCGc-GCCUGAcgcuGgCGGCGCg -3'
miRNA:   3'- aGgUCCGCGCuaUGGACU----UgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 30275 0.68 0.779202
Target:  5'- gUCCAcGGCGCGcaggugagcGCCagGAcgGCCGGCACc -3'
miRNA:   3'- -AGGU-CCGCGCua-------UGGa-CU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 58250 0.68 0.779202
Target:  5'- gUCCGGcGCgGCGGUcuuccGCgUGuACCGGCGCa -3'
miRNA:   3'- -AGGUC-CG-CGCUA-----UGgACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 131766 0.68 0.788589
Target:  5'- cUCCgAGGUGCGGcagcUG-CUGAGCCucGGCGCg -3'
miRNA:   3'- -AGG-UCCGCGCU----AUgGACUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 52993 0.68 0.788589
Target:  5'- aUCAGGCGCGugcuCCUGuAGCggCGGCAUg -3'
miRNA:   3'- aGGUCCGCGCuau-GGAC-UUG--GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11421 0.68 0.788589
Target:  5'- -gCAGGCGCGcgGgCUcu-CCAGCACc -3'
miRNA:   3'- agGUCCGCGCuaUgGAcuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 65419 0.68 0.78952
Target:  5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 96702 0.68 0.79783
Target:  5'- uUCCGGaGCGaGGUcaccuACCUGGGCCAGUuCa -3'
miRNA:   3'- -AGGUC-CGCgCUA-----UGGACUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 53267 0.68 0.79783
Target:  5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3'
miRNA:   3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 117515 0.68 0.806916
Target:  5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 42188 0.68 0.806916
Target:  5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3'
miRNA:   3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11624 0.68 0.806916
Target:  5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3'
miRNA:   3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.