miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 15210 0.67 0.813178
Target:  5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87912 0.67 0.815837
Target:  5'- -gCuGGCGC---GCCUGcGCCGGCGCu -3'
miRNA:   3'- agGuCCGCGcuaUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24386 0.67 0.815837
Target:  5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3'
miRNA:   3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 125627 0.67 0.815837
Target:  5'- gCCAGGCGCuGAaGCU----CCGGCACg -3'
miRNA:   3'- aGGUCCGCG-CUaUGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100183 0.67 0.815837
Target:  5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3'
miRNA:   3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 100809 0.67 0.824584
Target:  5'- gCCuGGCGCacgucGUGCCUGAgaACUcGCGCa -3'
miRNA:   3'- aGGuCCGCGc----UAUGGACU--UGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 67393 0.67 0.824584
Target:  5'- cUCCAGGUccGCGccguUGCC-GAaguccacgGCCAGCACc -3'
miRNA:   3'- -AGGUCCG--CGCu---AUGGaCU--------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86282 0.67 0.824584
Target:  5'- aUCCAGGCcacgcaGUGcgGCCUGGACgCGuccGCGCc -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUG-GU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 62641 0.67 0.825449
Target:  5'- gCCAGGCGCugcuggaagacguuGGccggcauggccacguUGCCguuGACCAGCACg -3'
miRNA:   3'- aGGUCCGCG--------------CU---------------AUGGac-UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 84994 0.67 0.83315
Target:  5'- cCCGGGCGCGuucGCCgauGCCGuucacGCGCu -3'
miRNA:   3'- aGGUCCGCGCua-UGGacuUGGU-----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 55841 0.67 0.83315
Target:  5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3'
miRNA:   3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 46240 0.67 0.840698
Target:  5'- aUCAGcGUgGCGAgcgugACCUGGaugguggGCCGGCACa -3'
miRNA:   3'- aGGUC-CG-CGCUa----UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 6602 0.67 0.840698
Target:  5'- gCCAGGUcgGCGcccAUCUGGaugaggcGCCGGCACg -3'
miRNA:   3'- aGGUCCG--CGCua-UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31917 0.67 0.841526
Target:  5'- gCCAGGUGCGcgGCCUcggGGGCaugucgaAGCAg -3'
miRNA:   3'- aGGUCCGCGCuaUGGA---CUUGg------UCGUg -5'
25600 5' -55.7 NC_005337.1 + 77371 0.67 0.841526
Target:  5'- cCCGGauccCGCGGUGCCgcaacaccAGCCGGCGCc -3'
miRNA:   3'- aGGUCc---GCGCUAUGGac------UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 123491 0.67 0.841526
Target:  5'- gUCCGGGa-CGGUcguccGCCUGAcgaugGCCGGUGCg -3'
miRNA:   3'- -AGGUCCgcGCUA-----UGGACU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49923 0.67 0.841526
Target:  5'- -aCAGGCGCGAgcGCggGGA-CAGCACg -3'
miRNA:   3'- agGUCCGCGCUa-UGgaCUUgGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.