miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 77072 0.67 0.846458
Target:  5'- uUCgCGGGCGCGGcACCcguacgccgaguaGGugCGGCACa -3'
miRNA:   3'- -AG-GUCCGCGCUaUGGa------------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 83902 0.67 0.849705
Target:  5'- gCCAGGCGCccGUGCCcGGgcccgucuccGCCGGCGu -3'
miRNA:   3'- aGGUCCGCGc-UAUGGaCU----------UGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 123071 0.67 0.849705
Target:  5'- gCCgagaAGG-GCGAUAUCgUGAACCAGCu- -3'
miRNA:   3'- aGG----UCCgCGCUAUGG-ACUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 40197 0.67 0.849705
Target:  5'- cUCGGGUGCccgGCCgcagGGACCAGCcCg -3'
miRNA:   3'- aGGUCCGCGcuaUGGa---CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 114361 0.67 0.849705
Target:  5'- aCCAcaCGCccUACCUGGuCCAGCACg -3'
miRNA:   3'- aGGUccGCGcuAUGGACUuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46011 0.67 0.849705
Target:  5'- cUCCGcGGCGCcc-GCCggcGcGCCGGCACg -3'
miRNA:   3'- -AGGU-CCGCGcuaUGGa--CuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 98050 0.67 0.849705
Target:  5'- gUCCGGGaGCGc-GCCgcGGCCGGCGCa -3'
miRNA:   3'- -AGGUCCgCGCuaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 122411 0.67 0.849705
Target:  5'- -gCGGcGCGCGGcGCCUguccgcgccGAugCGGCACa -3'
miRNA:   3'- agGUC-CGCGCUaUGGA---------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 58584 0.66 0.855308
Target:  5'- cUCC-GGCGCGGagUACUUGGccguggucauguucACCAcGCACu -3'
miRNA:   3'- -AGGuCCGCGCU--AUGGACU--------------UGGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 110246 0.66 0.8561
Target:  5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3'
miRNA:   3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 95839 0.66 0.85689
Target:  5'- cUCGGGCGUGAUGacgcgccCCUGGucguccACCAGCc- -3'
miRNA:   3'- aGGUCCGCGCUAU-------GGACU------UGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 85388 0.66 0.857678
Target:  5'- cUCCAGGUGCGuggucugGCCgccGGGCgGGgACg -3'
miRNA:   3'- -AGGUCCGCGCua-----UGGa--CUUGgUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 17006 0.66 0.857678
Target:  5'- aUCGGGCGgG--GCCUcGAcguCCAGCGCg -3'
miRNA:   3'- aGGUCCGCgCuaUGGA-CUu--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 18768 0.66 0.857678
Target:  5'- cUCCAGGuCGUcg-ACCUcgcGAgGCCGGCGCa -3'
miRNA:   3'- -AGGUCC-GCGcuaUGGA---CU-UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 10242 0.66 0.857678
Target:  5'- -gCAGGCGCGcgGCCUucGCgGGgCGCc -3'
miRNA:   3'- agGUCCGCGCuaUGGAcuUGgUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 132535 0.66 0.857678
Target:  5'- gUCCGGGCGg---GCCUGGACaucgacGCGCu -3'
miRNA:   3'- -AGGUCCGCgcuaUGGACUUGgu----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 10159 0.66 0.865439
Target:  5'- -aCAGGCGCGuccaGCCcuuGCCGGCGa -3'
miRNA:   3'- agGUCCGCGCua--UGGacuUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 23785 0.66 0.865439
Target:  5'- gCCAcgucgagcuGGCcCGGUACCUGcGCC-GCACg -3'
miRNA:   3'- aGGU---------CCGcGCUAUGGACuUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 127788 0.66 0.865439
Target:  5'- gCguGGUGCgGGUGCUggugGAcGCCGGCGCu -3'
miRNA:   3'- aGguCCGCG-CUAUGGa---CU-UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38483 0.66 0.865439
Target:  5'- gCCGGGCGCGcgcgucGCC-GAGCUGGC-Cg -3'
miRNA:   3'- aGGUCCGCGCua----UGGaCUUGGUCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.