miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 110246 0.66 0.8561
Target:  5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3'
miRNA:   3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 58584 0.66 0.855308
Target:  5'- cUCC-GGCGCGGagUACUUGGccguggucauguucACCAcGCACu -3'
miRNA:   3'- -AGGuCCGCGCU--AUGGACU--------------UGGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 98050 0.67 0.849705
Target:  5'- gUCCGGGaGCGc-GCCgcGGCCGGCGCa -3'
miRNA:   3'- -AGGUCCgCGCuaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 40197 0.67 0.849705
Target:  5'- cUCGGGUGCccgGCCgcagGGACCAGCcCg -3'
miRNA:   3'- aGGUCCGCGcuaUGGa---CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 114361 0.67 0.849705
Target:  5'- aCCAcaCGCccUACCUGGuCCAGCACg -3'
miRNA:   3'- aGGUccGCGcuAUGGACUuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 122411 0.67 0.849705
Target:  5'- -gCGGcGCGCGGcGCCUguccgcgccGAugCGGCACa -3'
miRNA:   3'- agGUC-CGCGCUaUGGA---------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46011 0.67 0.849705
Target:  5'- cUCCGcGGCGCcc-GCCggcGcGCCGGCACg -3'
miRNA:   3'- -AGGU-CCGCGcuaUGGa--CuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 123071 0.67 0.849705
Target:  5'- gCCgagaAGG-GCGAUAUCgUGAACCAGCu- -3'
miRNA:   3'- aGG----UCCgCGCUAUGG-ACUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 83902 0.67 0.849705
Target:  5'- gCCAGGCGCccGUGCCcGGgcccgucuccGCCGGCGu -3'
miRNA:   3'- aGGUCCGCGc-UAUGGaCU----------UGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 77072 0.67 0.846458
Target:  5'- uUCgCGGGCGCGGcACCcguacgccgaguaGGugCGGCACa -3'
miRNA:   3'- -AG-GUCCGCGCUaUGGa------------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31917 0.67 0.841526
Target:  5'- gCCAGGUGCGcgGCCUcggGGGCaugucgaAGCAg -3'
miRNA:   3'- aGGUCCGCGCuaUGGA---CUUGg------UCGUg -5'
25600 5' -55.7 NC_005337.1 + 123491 0.67 0.841526
Target:  5'- gUCCGGGa-CGGUcguccGCCUGAcgaugGCCGGUGCg -3'
miRNA:   3'- -AGGUCCgcGCUA-----UGGACU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49923 0.67 0.841526
Target:  5'- -aCAGGCGCGAgcGCggGGA-CAGCACg -3'
miRNA:   3'- agGUCCGCGCUa-UGgaCUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77371 0.67 0.841526
Target:  5'- cCCGGauccCGCGGUGCCgcaacaccAGCCGGCGCc -3'
miRNA:   3'- aGGUCc---GCGCUAUGGac------UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 6602 0.67 0.840698
Target:  5'- gCCAGGUcgGCGcccAUCUGGaugaggcGCCGGCACg -3'
miRNA:   3'- aGGUCCG--CGCua-UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46240 0.67 0.840698
Target:  5'- aUCAGcGUgGCGAgcgugACCUGGaugguggGCCGGCACa -3'
miRNA:   3'- aGGUC-CG-CGCUa----UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 55841 0.67 0.83315
Target:  5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3'
miRNA:   3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 84994 0.67 0.83315
Target:  5'- cCCGGGCGCGuucGCCgauGCCGuucacGCGCu -3'
miRNA:   3'- aGGUCCGCGCua-UGGacuUGGU-----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 62641 0.67 0.825449
Target:  5'- gCCAGGCGCugcuggaagacguuGGccggcauggccacguUGCCguuGACCAGCACg -3'
miRNA:   3'- aGGUCCGCG--------------CU---------------AUGGac-UUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.