miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 100809 0.67 0.824584
Target:  5'- gCCuGGCGCacgucGUGCCUGAgaACUcGCGCa -3'
miRNA:   3'- aGGuCCGCGc----UAUGGACU--UGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86282 0.67 0.824584
Target:  5'- aUCCAGGCcacgcaGUGcgGCCUGGACgCGuccGCGCc -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUG-GU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 67393 0.67 0.824584
Target:  5'- cUCCAGGUccGCGccguUGCC-GAaguccacgGCCAGCACc -3'
miRNA:   3'- -AGGUCCG--CGCu---AUGGaCU--------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 100183 0.67 0.815837
Target:  5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3'
miRNA:   3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24386 0.67 0.815837
Target:  5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3'
miRNA:   3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87912 0.67 0.815837
Target:  5'- -gCuGGCGC---GCCUGcGCCGGCGCu -3'
miRNA:   3'- agGuCCGCGcuaUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 125627 0.67 0.815837
Target:  5'- gCCAGGCGCuGAaGCU----CCGGCACg -3'
miRNA:   3'- aGGUCCGCG-CUaUGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 15210 0.67 0.813178
Target:  5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 117515 0.68 0.806916
Target:  5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 11624 0.68 0.806916
Target:  5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3'
miRNA:   3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 42188 0.68 0.806916
Target:  5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3'
miRNA:   3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53267 0.68 0.79783
Target:  5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3'
miRNA:   3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 96702 0.68 0.79783
Target:  5'- uUCCGGaGCGaGGUcaccuACCUGGGCCAGUuCa -3'
miRNA:   3'- -AGGUC-CGCgCUA-----UGGACUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 65419 0.68 0.78952
Target:  5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 52993 0.68 0.788589
Target:  5'- aUCAGGCGCGugcuCCUGuAGCggCGGCAUg -3'
miRNA:   3'- aGGUCCGCGCuau-GGAC-UUG--GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 131766 0.68 0.788589
Target:  5'- cUCCgAGGUGCGGcagcUG-CUGAGCCucGGCGCg -3'
miRNA:   3'- -AGG-UCCGCGCU----AUgGACUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11421 0.68 0.788589
Target:  5'- -gCAGGCGCGcgGgCUcu-CCAGCACc -3'
miRNA:   3'- agGUCCGCGCuaUgGAcuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 30275 0.68 0.779202
Target:  5'- gUCCAcGGCGCGcaggugagcGCCagGAcgGCCGGCACc -3'
miRNA:   3'- -AGGU-CCGCGCua-------UGGa-CU--UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.