miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 877 0.66 0.894247
Target:  5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3'
miRNA:   3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 877 0.66 0.894247
Target:  5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3'
miRNA:   3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 1662 0.76 0.359968
Target:  5'- cUCgCAGGCGCGucgcgaACCUGAACCgcagccgcAGCGCg -3'
miRNA:   3'- -AG-GUCCGCGCua----UGGACUUGG--------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 2209 0.68 0.769677
Target:  5'- -gCGGGCGCG--GCCcGGGCCgcgAGCGCg -3'
miRNA:   3'- agGUCCGCGCuaUGGaCUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 3036 0.71 0.627371
Target:  5'- gUCCuuGCGCGA--CUcGAACCAGCGCa -3'
miRNA:   3'- -AGGucCGCGCUauGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 6201 0.66 0.865439
Target:  5'- cUCGGGCGCGGcgACUgcauguggUGGugCAGCAg -3'
miRNA:   3'- aGGUCCGCGCUa-UGG--------ACUugGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 6602 0.67 0.840698
Target:  5'- gCCAGGUcgGCGcccAUCUGGaugaggcGCCGGCACg -3'
miRNA:   3'- aGGUCCG--CGCua-UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 8693 0.71 0.627371
Target:  5'- gCCucGGCGuCGuagauGUACCUG-GCCAGCACg -3'
miRNA:   3'- aGGu-CCGC-GC-----UAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9639 0.68 0.760025
Target:  5'- cUCgCAGaGCGCGAUGCUgagcAGCCcGCGCg -3'
miRNA:   3'- -AG-GUC-CGCGCUAUGGac--UUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9653 0.71 0.637803
Target:  5'- cUCCggAGGCGCGcaAUGCCU---CCAGCGCc -3'
miRNA:   3'- -AGG--UCCGCGC--UAUGGAcuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9924 0.66 0.880302
Target:  5'- -gCGGGCcaGCGcgGCCUGAugCGaucGCGCc -3'
miRNA:   3'- agGUCCG--CGCuaUGGACUugGU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 10159 0.66 0.865439
Target:  5'- -aCAGGCGCGuccaGCCcuuGCCGGCGa -3'
miRNA:   3'- agGUCCGCGCua--UGGacuUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 10242 0.66 0.857678
Target:  5'- -gCAGGCGCGcgGCCUucGCgGGgCGCc -3'
miRNA:   3'- agGUCCGCGCuaUGGAcuUGgUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 11421 0.68 0.788589
Target:  5'- -gCAGGCGCGcgGgCUcu-CCAGCACc -3'
miRNA:   3'- agGUCCGCGCuaUgGAcuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11624 0.68 0.806916
Target:  5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3'
miRNA:   3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11742 0.66 0.894247
Target:  5'- -gCAGcGCGCGucgccgcGCCaGGGCCAGCAg -3'
miRNA:   3'- agGUC-CGCGCua-----UGGaCUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 14702 0.69 0.724375
Target:  5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3'
miRNA:   3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 14793 0.66 0.872983
Target:  5'- gCUGGGCGCGGUguuguucucguGCgUGAGCgAGgACg -3'
miRNA:   3'- aGGUCCGCGCUA-----------UGgACUUGgUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 15210 0.67 0.813178
Target:  5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.