miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 15366 0.78 0.285418
Target:  5'- uUCCAGGCGCGcacucgGUACCUGGGaguGCACg -3'
miRNA:   3'- -AGGUCCGCGC------UAUGGACUUgguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 16906 0.69 0.740379
Target:  5'- gUCCAGGaucu---UCUGGACCAGCACg -3'
miRNA:   3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 17006 0.66 0.857678
Target:  5'- aUCGGGCGgG--GCCUcGAcguCCAGCGCg -3'
miRNA:   3'- aGGUCCGCgCuaUGGA-CUu--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 17793 0.66 0.894247
Target:  5'- cUCCAGGCGCGucugucGCgUGAAguacuCCucgauGCGCg -3'
miRNA:   3'- -AGGUCCGCGCua----UGgACUU-----GGu----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 18768 0.66 0.857678
Target:  5'- cUCCAGGuCGUcg-ACCUcgcGAgGCCGGCGCa -3'
miRNA:   3'- -AGGUCC-GCGcuaUGGA---CU-UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 20667 0.7 0.69383
Target:  5'- aCCAGGUGUGGUGCUUGGuguacuaaucuuuuCCGGCu- -3'
miRNA:   3'- aGGUCCGCGCUAUGGACUu-------------GGUCGug -5'
25600 5' -55.7 NC_005337.1 + 23785 0.66 0.865439
Target:  5'- gCCAcgucgagcuGGCcCGGUACCUGcGCC-GCACg -3'
miRNA:   3'- aGGU---------CCGcGCUAUGGACuUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24299 0.66 0.887392
Target:  5'- --aGGGCGUGGUGCUcGAgaaCAGCACc -3'
miRNA:   3'- aggUCCGCGCUAUGGaCUug-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24386 0.67 0.815837
Target:  5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3'
miRNA:   3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 30275 0.68 0.779202
Target:  5'- gUCCAcGGCGCGcaggugagcGCCagGAcgGCCGGCACc -3'
miRNA:   3'- -AGGU-CCGCGCua-------UGGa-CU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31430 0.69 0.730403
Target:  5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 31917 0.67 0.841526
Target:  5'- gCCAGGUGCGcgGCCUcggGGGCaugucgaAGCAg -3'
miRNA:   3'- aGGUCCGCGCuaUGGA---CUUGg------UCGUg -5'
25600 5' -55.7 NC_005337.1 + 35234 0.71 0.627371
Target:  5'- gUCAGGUcgGCG-UACCUGGcguCCAGCGCc -3'
miRNA:   3'- aGGUCCG--CGCuAUGGACUu--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 35337 0.7 0.689716
Target:  5'- cCCAGGCGUGcGUggcGCCgaagugGAGCCGGCuCa -3'
miRNA:   3'- aGGUCCGCGC-UA---UGGa-----CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 35758 0.66 0.872983
Target:  5'- gCUGGGCGCGA--CCgGGAUCguGGCGCg -3'
miRNA:   3'- aGGUCCGCGCUauGGaCUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 37083 0.71 0.584728
Target:  5'- aCCAuGGCGCGGUcgagcucGCCgGAGCgCAGCAg -3'
miRNA:   3'- aGGU-CCGCGCUA-------UGGaCUUG-GUCGUg -5'
25600 5' -55.7 NC_005337.1 + 37386 0.81 0.17805
Target:  5'- aCCAGGCGCGAcACCgugucgaaGAugCAGCACu -3'
miRNA:   3'- aGGUCCGCGCUaUGGa-------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38483 0.66 0.865439
Target:  5'- gCCGGGCGCGcgcgucGCC-GAGCUGGC-Cg -3'
miRNA:   3'- aGGUCCGCGCua----UGGaCUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 38514 0.72 0.53458
Target:  5'- cCCGGGCGC---GCCUGGugCAGgGCc -3'
miRNA:   3'- aGGUCCGCGcuaUGGACUugGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 38996 0.79 0.240848
Target:  5'- gCCGGGCGCuggggaaAUACCUGGGCCcGCGCg -3'
miRNA:   3'- aGGUCCGCGc------UAUGGACUUGGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.