miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 40197 0.67 0.849705
Target:  5'- cUCGGGUGCccgGCCgcagGGACCAGCcCg -3'
miRNA:   3'- aGGUCCGCGcuaUGGa---CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 41810 0.66 0.887392
Target:  5'- gUCgAGGCGUuc-GCCagGAACCGGCGg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGa-CUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 42188 0.68 0.806916
Target:  5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3'
miRNA:   3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 43688 0.66 0.872983
Target:  5'- cCCGGGCG-GAcGCCgacgacGGACCGGC-Cg -3'
miRNA:   3'- aGGUCCGCgCUaUGGa-----CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 46011 0.67 0.849705
Target:  5'- cUCCGcGGCGCcc-GCCggcGcGCCGGCACg -3'
miRNA:   3'- -AGGU-CCGCGcuaUGGa--CuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46240 0.67 0.840698
Target:  5'- aUCAGcGUgGCGAgcgugACCUGGaugguggGCCGGCACa -3'
miRNA:   3'- aGGUC-CG-CGCUa----UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 47990 0.72 0.554894
Target:  5'- gUCCAGGCcgcacuGCGugGCCUGGAUCcGCGCg -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 48040 0.66 0.865439
Target:  5'- ----cGCGaCGGUGCCcaacgccgUGAGCCGGCACu -3'
miRNA:   3'- aggucCGC-GCUAUGG--------ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49299 0.76 0.359968
Target:  5'- cCCGGGCggaccgGCGAUACCUGGAggccauCCAGCGa -3'
miRNA:   3'- aGGUCCG------CGCUAUGGACUU------GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 49923 0.67 0.841526
Target:  5'- -aCAGGCGCGAgcGCggGGA-CAGCACg -3'
miRNA:   3'- agGUCCGCGCUa-UGgaCUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 50352 0.72 0.554894
Target:  5'- gCCcGGC-CGA-GCCUGGGCCAGCAg -3'
miRNA:   3'- aGGuCCGcGCUaUGGACUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 50599 0.66 0.880302
Target:  5'- cCCAGacCGCGAUcgacgACCUGcGCCGGCuGCu -3'
miRNA:   3'- aGGUCc-GCGCUA-----UGGACuUGGUCG-UG- -5'
25600 5' -55.7 NC_005337.1 + 51682 0.68 0.760025
Target:  5'- gCCGGGCGUGAcggacACCgucuccaugGAGauCCAGCGCg -3'
miRNA:   3'- aGGUCCGCGCUa----UGGa--------CUU--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 52573 0.69 0.709179
Target:  5'- cUCCGcggggacGGCGCGGcgGCgCUGGcggccaagcagaGCCAGCACa -3'
miRNA:   3'- -AGGU-------CCGCGCUa-UG-GACU------------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 52975 0.66 0.894247
Target:  5'- cUCCGcGGagauGCGGUugUUGAGCguGUACg -3'
miRNA:   3'- -AGGU-CCg---CGCUAugGACUUGguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 52993 0.68 0.788589
Target:  5'- aUCAGGCGCGugcuCCUGuAGCggCGGCAUg -3'
miRNA:   3'- aGGUCCGCGCuau-GGAC-UUG--GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53267 0.68 0.79783
Target:  5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3'
miRNA:   3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53699 0.66 0.887392
Target:  5'- gCCGGGCGCGu--CCUaaauAGCCcaugaAGCGCa -3'
miRNA:   3'- aGGUCCGCGCuauGGAc---UUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 54246 0.71 0.606528
Target:  5'- gUCC-GGCGCGuccggGCCgGGugCGGCGCu -3'
miRNA:   3'- -AGGuCCGCGCua---UGGaCUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 55841 0.67 0.83315
Target:  5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3'
miRNA:   3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.