miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 57262 0.73 0.514534
Target:  5'- gUUCGGGCaCGggGCCgcgcgGGGCCGGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGa----CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 57520 0.73 0.522517
Target:  5'- uUCguGGCGCGcgucuuccuggGCCUGGACCGcauGCACg -3'
miRNA:   3'- -AGguCCGCGCua---------UGGACUUGGU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 58250 0.68 0.779202
Target:  5'- gUCCGGcGCgGCGGUcuuccGCgUGuACCGGCGCa -3'
miRNA:   3'- -AGGUC-CG-CGCUA-----UGgACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 58584 0.66 0.855308
Target:  5'- cUCC-GGCGCGGagUACUUGGccguggucauguucACCAcGCACu -3'
miRNA:   3'- -AGGuCCGCGCU--AUGGACU--------------UGGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 58875 0.76 0.336247
Target:  5'- gCCGaGCGCGGUACgUGAACguGCACu -3'
miRNA:   3'- aGGUcCGCGCUAUGgACUUGguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 62216 0.66 0.872983
Target:  5'- uUCC-GGCGgGAcacggggaUGCCgauguGCCGGCACa -3'
miRNA:   3'- -AGGuCCGCgCU--------AUGGacu--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 62641 0.67 0.825449
Target:  5'- gCCAGGCGCugcuggaagacguuGGccggcauggccacguUGCCguuGACCAGCACg -3'
miRNA:   3'- aGGUCCGCG--------------CU---------------AUGGac-UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 65047 0.66 0.887392
Target:  5'- gUCCAGGCGCGcgcgcacguUCUGGAaguCCGuGCGCc -3'
miRNA:   3'- -AGGUCCGCGCuau------GGACUU---GGU-CGUG- -5'
25600 5' -55.7 NC_005337.1 + 65419 0.68 0.78952
Target:  5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 65790 0.66 0.894247
Target:  5'- gCCAGcaGCGCGGcGCCcGGugCGGCGg -3'
miRNA:   3'- aGGUC--CGCGCUaUGGaCUugGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 65984 0.66 0.880302
Target:  5'- gCCucuGGUGCGAgGCCgugcgucccgUGGGCgAGCGCg -3'
miRNA:   3'- aGGu--CCGCGCUaUGG----------ACUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 67393 0.67 0.824584
Target:  5'- cUCCAGGUccGCGccguUGCC-GAaguccacgGCCAGCACc -3'
miRNA:   3'- -AGGUCCG--CGCu---AUGGaCU--------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 68566 0.71 0.637803
Target:  5'- gCCAuGGCGCGGaGCUc-GGCCAGCACc -3'
miRNA:   3'- aGGU-CCGCGCUaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 69225 0.66 0.887392
Target:  5'- uUCCAGaacguGCGCGcgcGCCUGGACguGC-Cg -3'
miRNA:   3'- -AGGUC-----CGCGCua-UGGACUUGguCGuG- -5'
25600 5' -55.7 NC_005337.1 + 72028 0.71 0.585763
Target:  5'- aCCuGGaguuCGCG-UACCUGuGCCGGCACa -3'
miRNA:   3'- aGGuCC----GCGCuAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74210 0.66 0.880302
Target:  5'- -aCAGGguCGCGcaccACCUGAACCugugggAGCACa -3'
miRNA:   3'- agGUCC--GCGCua--UGGACUUGG------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74777 0.69 0.737396
Target:  5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3'
miRNA:   3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77008 0.73 0.475419
Target:  5'- gCCGGccccGCGCGGccccgUGCCcGAACCAGCGCc -3'
miRNA:   3'- aGGUC----CGCGCU-----AUGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77072 0.67 0.846458
Target:  5'- uUCgCGGGCGCGGcACCcguacgccgaguaGGugCGGCACa -3'
miRNA:   3'- -AG-GUCCGCGCUaUGGa------------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77150 0.68 0.760025
Target:  5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.