miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 77371 0.67 0.841526
Target:  5'- cCCGGauccCGCGGUGCCgcaacaccAGCCGGCGCc -3'
miRNA:   3'- aGGUCc---GCGCUAUGGac------UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 80092 0.71 0.606528
Target:  5'- gUCCGGuGCGCG-UGCCUGaAGCCgAGC-Ca -3'
miRNA:   3'- -AGGUC-CGCGCuAUGGAC-UUGG-UCGuG- -5'
25600 5' -55.7 NC_005337.1 + 80134 0.7 0.688686
Target:  5'- aCCGGGCGCGAcacgcggcucccgUACuacugCUGGuacgggccguGCCGGCGCg -3'
miRNA:   3'- aGGUCCGCGCU-------------AUG-----GACU----------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 80341 1.11 0.00182
Target:  5'- uUCCAGGCGCGAUACCUGAACCAGCACg -3'
miRNA:   3'- -AGGUCCGCGCUAUGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 82196 0.7 0.670073
Target:  5'- gCCGGGCGCGcacgGCCggcggucgaagagccGAACCAGCu- -3'
miRNA:   3'- aGGUCCGCGCua--UGGa--------------CUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 83902 0.67 0.849705
Target:  5'- gCCAGGCGCccGUGCCcGGgcccgucuccGCCGGCGu -3'
miRNA:   3'- aGGUCCGCGc-UAUGGaCU----------UGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 83962 0.66 0.870743
Target:  5'- gUCCGcgcagggcagcggcGGCGCGGgcggGCacguCUGGGCCuGCACg -3'
miRNA:   3'- -AGGU--------------CCGCGCUa---UG----GACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 84994 0.67 0.83315
Target:  5'- cCCGGGCGCGuucGCCgauGCCGuucacGCGCu -3'
miRNA:   3'- aGGUCCGCGCua-UGGacuUGGU-----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 85388 0.66 0.857678
Target:  5'- cUCCAGGUGCGuggucugGCCgccGGGCgGGgACg -3'
miRNA:   3'- -AGGUCCGCGCua-----UGGa--CUUGgUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 85873 0.68 0.769677
Target:  5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3'
miRNA:   3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 86282 0.67 0.824584
Target:  5'- aUCCAGGCcacgcaGUGcgGCCUGGACgCGuccGCGCc -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUG-GU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 87794 0.69 0.710197
Target:  5'- gCCaAGGCGCGGcugcUGCCcggGAGCUcgcGGCGCg -3'
miRNA:   3'- aGG-UCCGCGCU----AUGGa--CUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87912 0.67 0.815837
Target:  5'- -gCuGGCGC---GCCUGcGCCGGCGCu -3'
miRNA:   3'- agGuCCGCGcuaUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 90842 0.66 0.872983
Target:  5'- aUCAGGUugaugcuggacaGCGucuCCaGGACCAGCGCg -3'
miRNA:   3'- aGGUCCG------------CGCuauGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 95839 0.66 0.85689
Target:  5'- cUCGGGCGUGAUGacgcgccCCUGGucguccACCAGCc- -3'
miRNA:   3'- aGGUCCGCGCUAU-------GGACU------UGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 96702 0.68 0.79783
Target:  5'- uUCCGGaGCGaGGUcaccuACCUGGGCCAGUuCa -3'
miRNA:   3'- -AGGUC-CGCgCUA-----UGGACUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 98050 0.67 0.849705
Target:  5'- gUCCGGGaGCGc-GCCgcGGCCGGCGCa -3'
miRNA:   3'- -AGGUCCgCGCuaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.