Results 101 - 120 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 100183 | 0.67 | 0.815837 |
Target: 5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3' miRNA: 3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 100809 | 0.67 | 0.824584 |
Target: 5'- gCCuGGCGCacgucGUGCCUGAgaACUcGCGCa -3' miRNA: 3'- aGGuCCGCGc----UAUGGACU--UGGuCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 101200 | 0.69 | 0.754177 |
Target: 5'- gUCgCuGGUGCGAUGCCUGAuggcguccggguucgACCucugggccaucgAGCGCg -3' miRNA: 3'- -AG-GuCCGCGCUAUGGACU---------------UGG------------UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 101463 | 0.75 | 0.393369 |
Target: 5'- --gGGGCGCGAgUGCgUGGACCAGgCGCa -3' miRNA: 3'- aggUCCGCGCU-AUGgACUUGGUC-GUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 102028 | 0.66 | 0.872238 |
Target: 5'- -gCGGGCGUGAUcgcguacGCCUGcuuCCcggAGCACg -3' miRNA: 3'- agGUCCGCGCUA-------UGGACuu-GG---UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 106312 | 0.74 | 0.437843 |
Target: 5'- cUCCAGGUucCGGUGCUccucGAACCGGCGCa -3' miRNA: 3'- -AGGUCCGc-GCUAUGGa---CUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 108549 | 0.68 | 0.769677 |
Target: 5'- gCgGGGCGCGc-GCCUGAcgcuGgCGGCGCg -3' miRNA: 3'- aGgUCCGCGCuaUGGACU----UgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 109583 | 0.66 | 0.887392 |
Target: 5'- cCCAGGUGCuuGAagcGCCUGAG-CAGCGu -3' miRNA: 3'- aGGUCCGCG--CUa--UGGACUUgGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 110246 | 0.66 | 0.8561 |
Target: 5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3' miRNA: 3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 110478 | 0.7 | 0.699986 |
Target: 5'- cCCGugcGGCGCaGGUACC-GGGCCAGCuCg -3' miRNA: 3'- aGGU---CCGCG-CUAUGGaCUUGGUCGuG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 111130 | 0.73 | 0.514534 |
Target: 5'- -aCGGGCGUGAagagcaggaugUGCUUGAAgCGGCGCa -3' miRNA: 3'- agGUCCGCGCU-----------AUGGACUUgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 112682 | 0.66 | 0.894247 |
Target: 5'- gUCCAGGuUGCGGUcgaugGCgUGGAUCAuGUACu -3' miRNA: 3'- -AGGUCC-GCGCUA-----UGgACUUGGU-CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 114361 | 0.67 | 0.849705 |
Target: 5'- aCCAcaCGCccUACCUGGuCCAGCACg -3' miRNA: 3'- aGGUccGCGcuAUGGACUuGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 115145 | 0.7 | 0.669035 |
Target: 5'- cCCGGGCuuCGAccACCUGGagauGCCGGCGCc -3' miRNA: 3'- aGGUCCGc-GCUa-UGGACU----UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 117515 | 0.68 | 0.806916 |
Target: 5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3' miRNA: 3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 120777 | 0.7 | 0.669035 |
Target: 5'- aUCCGGGUGaccggGAUGCagCUGGAgCGGCGCg -3' miRNA: 3'- -AGGUCCGCg----CUAUG--GACUUgGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 122411 | 0.67 | 0.849705 |
Target: 5'- -gCGGcGCGCGGcGCCUguccgcgccGAugCGGCACa -3' miRNA: 3'- agGUC-CGCGCUaUGGA---------CUugGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 122534 | 0.66 | 0.887392 |
Target: 5'- cCCuGGCGCGGcgacgcGCgCUGcAGCCGGUGCu -3' miRNA: 3'- aGGuCCGCGCUa-----UG-GAC-UUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 122926 | 0.73 | 0.523518 |
Target: 5'- --aGGGCGCGAUG-CUGAACCcggugguGGCGCa -3' miRNA: 3'- aggUCCGCGCUAUgGACUUGG-------UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 123071 | 0.67 | 0.849705 |
Target: 5'- gCCgagaAGG-GCGAUAUCgUGAACCAGCu- -3' miRNA: 3'- aGG----UCCgCGCUAUGG-ACUUGGUCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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