miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 110478 0.7 0.699986
Target:  5'- cCCGugcGGCGCaGGUACC-GGGCCAGCuCg -3'
miRNA:   3'- aGGU---CCGCG-CUAUGGaCUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 110246 0.66 0.8561
Target:  5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3'
miRNA:   3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 109583 0.66 0.887392
Target:  5'- cCCAGGUGCuuGAagcGCCUGAG-CAGCGu -3'
miRNA:   3'- aGGUCCGCG--CUa--UGGACUUgGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 108549 0.68 0.769677
Target:  5'- gCgGGGCGCGc-GCCUGAcgcuGgCGGCGCg -3'
miRNA:   3'- aGgUCCGCGCuaUGGACU----UgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 106312 0.74 0.437843
Target:  5'- cUCCAGGUucCGGUGCUccucGAACCGGCGCa -3'
miRNA:   3'- -AGGUCCGc-GCUAUGGa---CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 102028 0.66 0.872238
Target:  5'- -gCGGGCGUGAUcgcguacGCCUGcuuCCcggAGCACg -3'
miRNA:   3'- agGUCCGCGCUA-------UGGACuu-GG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 101463 0.75 0.393369
Target:  5'- --gGGGCGCGAgUGCgUGGACCAGgCGCa -3'
miRNA:   3'- aggUCCGCGCU-AUGgACUUGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 101200 0.69 0.754177
Target:  5'- gUCgCuGGUGCGAUGCCUGAuggcguccggguucgACCucugggccaucgAGCGCg -3'
miRNA:   3'- -AG-GuCCGCGCUAUGGACU---------------UGG------------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100809 0.67 0.824584
Target:  5'- gCCuGGCGCacgucGUGCCUGAgaACUcGCGCa -3'
miRNA:   3'- aGGuCCGCGc----UAUGGACU--UGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100183 0.67 0.815837
Target:  5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3'
miRNA:   3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 98050 0.67 0.849705
Target:  5'- gUCCGGGaGCGc-GCCgcGGCCGGCGCa -3'
miRNA:   3'- -AGGUCCgCGCuaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 96702 0.68 0.79783
Target:  5'- uUCCGGaGCGaGGUcaccuACCUGGGCCAGUuCa -3'
miRNA:   3'- -AGGUC-CGCgCUA-----UGGACUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 95839 0.66 0.85689
Target:  5'- cUCGGGCGUGAUGacgcgccCCUGGucguccACCAGCc- -3'
miRNA:   3'- aGGUCCGCGCUAU-------GGACU------UGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 90842 0.66 0.872983
Target:  5'- aUCAGGUugaugcuggacaGCGucuCCaGGACCAGCGCg -3'
miRNA:   3'- aGGUCCG------------CGCuauGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87912 0.67 0.815837
Target:  5'- -gCuGGCGC---GCCUGcGCCGGCGCu -3'
miRNA:   3'- agGuCCGCGcuaUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 87794 0.69 0.710197
Target:  5'- gCCaAGGCGCGGcugcUGCCcggGAGCUcgcGGCGCg -3'
miRNA:   3'- aGG-UCCGCGCU----AUGGa--CUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86282 0.67 0.824584
Target:  5'- aUCCAGGCcacgcaGUGcgGCCUGGACgCGuccGCGCc -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUG-GU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.