miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 85873 0.68 0.769677
Target:  5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3'
miRNA:   3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 85388 0.66 0.857678
Target:  5'- cUCCAGGUGCGuggucugGCCgccGGGCgGGgACg -3'
miRNA:   3'- -AGGUCCGCGCua-----UGGa--CUUGgUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 84994 0.67 0.83315
Target:  5'- cCCGGGCGCGuucGCCgauGCCGuucacGCGCu -3'
miRNA:   3'- aGGUCCGCGCua-UGGacuUGGU-----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 83962 0.66 0.870743
Target:  5'- gUCCGcgcagggcagcggcGGCGCGGgcggGCacguCUGGGCCuGCACg -3'
miRNA:   3'- -AGGU--------------CCGCGCUa---UG----GACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 83902 0.67 0.849705
Target:  5'- gCCAGGCGCccGUGCCcGGgcccgucuccGCCGGCGu -3'
miRNA:   3'- aGGUCCGCGc-UAUGGaCU----------UGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 82196 0.7 0.670073
Target:  5'- gCCGGGCGCGcacgGCCggcggucgaagagccGAACCAGCu- -3'
miRNA:   3'- aGGUCCGCGCua--UGGa--------------CUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 80341 1.11 0.00182
Target:  5'- uUCCAGGCGCGAUACCUGAACCAGCACg -3'
miRNA:   3'- -AGGUCCGCGCUAUGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 80134 0.7 0.688686
Target:  5'- aCCGGGCGCGAcacgcggcucccgUACuacugCUGGuacgggccguGCCGGCGCg -3'
miRNA:   3'- aGGUCCGCGCU-------------AUG-----GACU----------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 80092 0.71 0.606528
Target:  5'- gUCCGGuGCGCG-UGCCUGaAGCCgAGC-Ca -3'
miRNA:   3'- -AGGUC-CGCGCuAUGGAC-UUGG-UCGuG- -5'
25600 5' -55.7 NC_005337.1 + 77371 0.67 0.841526
Target:  5'- cCCGGauccCGCGGUGCCgcaacaccAGCCGGCGCc -3'
miRNA:   3'- aGGUCc---GCGCUAUGGac------UUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77150 0.68 0.760025
Target:  5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77072 0.67 0.846458
Target:  5'- uUCgCGGGCGCGGcACCcguacgccgaguaGGugCGGCACa -3'
miRNA:   3'- -AG-GUCCGCGCUaUGGa------------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77008 0.73 0.475419
Target:  5'- gCCGGccccGCGCGGccccgUGCCcGAACCAGCGCc -3'
miRNA:   3'- aGGUC----CGCGCU-----AUGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74777 0.69 0.737396
Target:  5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3'
miRNA:   3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74210 0.66 0.880302
Target:  5'- -aCAGGguCGCGcaccACCUGAACCugugggAGCACa -3'
miRNA:   3'- agGUCC--GCGCua--UGGACUUGG------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 72028 0.71 0.585763
Target:  5'- aCCuGGaguuCGCG-UACCUGuGCCGGCACa -3'
miRNA:   3'- aGGuCC----GCGCuAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 69225 0.66 0.887392
Target:  5'- uUCCAGaacguGCGCGcgcGCCUGGACguGC-Cg -3'
miRNA:   3'- -AGGUC-----CGCGCua-UGGACUUGguCGuG- -5'
25600 5' -55.7 NC_005337.1 + 68566 0.71 0.637803
Target:  5'- gCCAuGGCGCGGaGCUc-GGCCAGCACc -3'
miRNA:   3'- aGGU-CCGCGCUaUGGacUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 67393 0.67 0.824584
Target:  5'- cUCCAGGUccGCGccguUGCC-GAaguccacgGCCAGCACc -3'
miRNA:   3'- -AGGUCCG--CGCu---AUGGaCU--------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 65984 0.66 0.880302
Target:  5'- gCCucuGGUGCGAgGCCgugcgucccgUGGGCgAGCGCg -3'
miRNA:   3'- aGGu--CCGCGCUaUGG----------ACUUGgUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.