Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25600 | 5' | -55.7 | NC_005337.1 | + | 65790 | 0.66 | 0.894247 |
Target: 5'- gCCAGcaGCGCGGcGCCcGGugCGGCGg -3' miRNA: 3'- aGGUC--CGCGCUaUGGaCUugGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 65419 | 0.68 | 0.78952 |
Target: 5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3' miRNA: 3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 65047 | 0.66 | 0.887392 |
Target: 5'- gUCCAGGCGCGcgcgcacguUCUGGAaguCCGuGCGCc -3' miRNA: 3'- -AGGUCCGCGCuau------GGACUU---GGU-CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 62641 | 0.67 | 0.825449 |
Target: 5'- gCCAGGCGCugcuggaagacguuGGccggcauggccacguUGCCguuGACCAGCACg -3' miRNA: 3'- aGGUCCGCG--------------CU---------------AUGGac-UUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 62216 | 0.66 | 0.872983 |
Target: 5'- uUCC-GGCGgGAcacggggaUGCCgauguGCCGGCACa -3' miRNA: 3'- -AGGuCCGCgCU--------AUGGacu--UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 58875 | 0.76 | 0.336247 |
Target: 5'- gCCGaGCGCGGUACgUGAACguGCACu -3' miRNA: 3'- aGGUcCGCGCUAUGgACUUGguCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 58584 | 0.66 | 0.855308 |
Target: 5'- cUCC-GGCGCGGagUACUUGGccguggucauguucACCAcGCACu -3' miRNA: 3'- -AGGuCCGCGCU--AUGGACU--------------UGGU-CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 58250 | 0.68 | 0.779202 |
Target: 5'- gUCCGGcGCgGCGGUcuuccGCgUGuACCGGCGCa -3' miRNA: 3'- -AGGUC-CG-CGCUA-----UGgACuUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 57520 | 0.73 | 0.522517 |
Target: 5'- uUCguGGCGCGcgucuuccuggGCCUGGACCGcauGCACg -3' miRNA: 3'- -AGguCCGCGCua---------UGGACUUGGU---CGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 57262 | 0.73 | 0.514534 |
Target: 5'- gUUCGGGCaCGggGCCgcgcgGGGCCGGCGCg -3' miRNA: 3'- -AGGUCCGcGCuaUGGa----CUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 55841 | 0.67 | 0.83315 |
Target: 5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3' miRNA: 3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 54246 | 0.71 | 0.606528 |
Target: 5'- gUCC-GGCGCGuccggGCCgGGugCGGCGCu -3' miRNA: 3'- -AGGuCCGCGCua---UGGaCUugGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 53699 | 0.66 | 0.887392 |
Target: 5'- gCCGGGCGCGu--CCUaaauAGCCcaugaAGCGCa -3' miRNA: 3'- aGGUCCGCGCuauGGAc---UUGG-----UCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 53267 | 0.68 | 0.79783 |
Target: 5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3' miRNA: 3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 52993 | 0.68 | 0.788589 |
Target: 5'- aUCAGGCGCGugcuCCUGuAGCggCGGCAUg -3' miRNA: 3'- aGGUCCGCGCuau-GGAC-UUG--GUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 52975 | 0.66 | 0.894247 |
Target: 5'- cUCCGcGGagauGCGGUugUUGAGCguGUACg -3' miRNA: 3'- -AGGU-CCg---CGCUAugGACUUGguCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 52573 | 0.69 | 0.709179 |
Target: 5'- cUCCGcggggacGGCGCGGcgGCgCUGGcggccaagcagaGCCAGCACa -3' miRNA: 3'- -AGGU-------CCGCGCUa-UG-GACU------------UGGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 51682 | 0.68 | 0.760025 |
Target: 5'- gCCGGGCGUGAcggacACCgucuccaugGAGauCCAGCGCg -3' miRNA: 3'- aGGUCCGCGCUa----UGGa--------CUU--GGUCGUG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 50599 | 0.66 | 0.880302 |
Target: 5'- cCCAGacCGCGAUcgacgACCUGcGCCGGCuGCu -3' miRNA: 3'- aGGUCc-GCGCUA-----UGGACuUGGUCG-UG- -5' |
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25600 | 5' | -55.7 | NC_005337.1 | + | 50352 | 0.72 | 0.554894 |
Target: 5'- gCCcGGC-CGA-GCCUGGGCCAGCAg -3' miRNA: 3'- aGGuCCGcGCUaUGGACUUGGUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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