miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 49923 0.67 0.841526
Target:  5'- -aCAGGCGCGAgcGCggGGA-CAGCACg -3'
miRNA:   3'- agGUCCGCGCUa-UGgaCUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49299 0.76 0.359968
Target:  5'- cCCGGGCggaccgGCGAUACCUGGAggccauCCAGCGa -3'
miRNA:   3'- aGGUCCG------CGCUAUGGACUU------GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 48040 0.66 0.865439
Target:  5'- ----cGCGaCGGUGCCcaacgccgUGAGCCGGCACu -3'
miRNA:   3'- aggucCGC-GCUAUGG--------ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 47990 0.72 0.554894
Target:  5'- gUCCAGGCcgcacuGCGugGCCUGGAUCcGCGCg -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46240 0.67 0.840698
Target:  5'- aUCAGcGUgGCGAgcgugACCUGGaugguggGCCGGCACa -3'
miRNA:   3'- aGGUC-CG-CGCUa----UGGACU-------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 46011 0.67 0.849705
Target:  5'- cUCCGcGGCGCcc-GCCggcGcGCCGGCACg -3'
miRNA:   3'- -AGGU-CCGCGcuaUGGa--CuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 43688 0.66 0.872983
Target:  5'- cCCGGGCG-GAcGCCgacgacGGACCGGC-Cg -3'
miRNA:   3'- aGGUCCGCgCUaUGGa-----CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 42188 0.68 0.806916
Target:  5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3'
miRNA:   3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 41810 0.66 0.887392
Target:  5'- gUCgAGGCGUuc-GCCagGAACCGGCGg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGa-CUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 40197 0.67 0.849705
Target:  5'- cUCGGGUGCccgGCCgcagGGACCAGCcCg -3'
miRNA:   3'- aGGUCCGCGcuaUGGa---CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 38996 0.79 0.240848
Target:  5'- gCCGGGCGCuggggaaAUACCUGGGCCcGCGCg -3'
miRNA:   3'- aGGUCCGCGc------UAUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38514 0.72 0.53458
Target:  5'- cCCGGGCGC---GCCUGGugCAGgGCc -3'
miRNA:   3'- aGGUCCGCGcuaUGGACUugGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 38483 0.66 0.865439
Target:  5'- gCCGGGCGCGcgcgucGCC-GAGCUGGC-Cg -3'
miRNA:   3'- aGGUCCGCGCua----UGGaCUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 37386 0.81 0.17805
Target:  5'- aCCAGGCGCGAcACCgugucgaaGAugCAGCACu -3'
miRNA:   3'- aGGUCCGCGCUaUGGa-------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 37083 0.71 0.584728
Target:  5'- aCCAuGGCGCGGUcgagcucGCCgGAGCgCAGCAg -3'
miRNA:   3'- aGGU-CCGCGCUA-------UGGaCUUG-GUCGUg -5'
25600 5' -55.7 NC_005337.1 + 35758 0.66 0.872983
Target:  5'- gCUGGGCGCGA--CCgGGAUCguGGCGCg -3'
miRNA:   3'- aGGUCCGCGCUauGGaCUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 35337 0.7 0.689716
Target:  5'- cCCAGGCGUGcGUggcGCCgaagugGAGCCGGCuCa -3'
miRNA:   3'- aGGUCCGCGC-UA---UGGa-----CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 35234 0.71 0.627371
Target:  5'- gUCAGGUcgGCG-UACCUGGcguCCAGCGCc -3'
miRNA:   3'- aGGUCCG--CGCuAUGGACUu--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31917 0.67 0.841526
Target:  5'- gCCAGGUGCGcgGCCUcggGGGCaugucgaAGCAg -3'
miRNA:   3'- aGGUCCGCGCuaUGGA---CUUGg------UCGUg -5'
25600 5' -55.7 NC_005337.1 + 31430 0.69 0.730403
Target:  5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.