miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 85873 0.68 0.769677
Target:  5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3'
miRNA:   3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 115145 0.7 0.669035
Target:  5'- cCCGGGCuuCGAccACCUGGagauGCCGGCGCc -3'
miRNA:   3'- aGGUCCGc-GCUa-UGGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 14702 0.69 0.724375
Target:  5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3'
miRNA:   3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 31430 0.69 0.730403
Target:  5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 74777 0.69 0.737396
Target:  5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3'
miRNA:   3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 16906 0.69 0.740379
Target:  5'- gUCCAGGaucu---UCUGGACCAGCACg -3'
miRNA:   3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9639 0.68 0.760025
Target:  5'- cUCgCAGaGCGCGAUGCUgagcAGCCcGCGCg -3'
miRNA:   3'- -AG-GUC-CGCGCUAUGGac--UUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77150 0.68 0.760025
Target:  5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 120777 0.7 0.669035
Target:  5'- aUCCGGGUGaccggGAUGCagCUGGAgCGGCGCg -3'
miRNA:   3'- -AGGUCCGCg----CUAUG--GACUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 128765 0.71 0.637803
Target:  5'- gCCGGcGCGCGA-ACCUGG--UAGCACg -3'
miRNA:   3'- aGGUC-CGCGCUaUGGACUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 8693 0.71 0.627371
Target:  5'- gCCucGGCGuCGuagauGUACCUG-GCCAGCACg -3'
miRNA:   3'- aGGu-CCGC-GC-----UAUGGACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 15366 0.78 0.285418
Target:  5'- uUCCAGGCGCGcacucgGUACCUGGGaguGCACg -3'
miRNA:   3'- -AGGUCCGCGC------UAUGGACUUgguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 49299 0.76 0.359968
Target:  5'- cCCGGGCggaccgGCGAUACCUGGAggccauCCAGCGa -3'
miRNA:   3'- aGGUCCG------CGCUAUGGACUU------GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 101463 0.75 0.393369
Target:  5'- --gGGGCGCGAgUGCgUGGACCAGgCGCa -3'
miRNA:   3'- aggUCCGCGCU-AUGgACUUGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 77008 0.73 0.475419
Target:  5'- gCCGGccccGCGCGGccccgUGCCcGAACCAGCGCc -3'
miRNA:   3'- aGGUC----CGCGCU-----AUGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 111130 0.73 0.514534
Target:  5'- -aCGGGCGUGAagagcaggaugUGCUUGAAgCGGCGCa -3'
miRNA:   3'- agGUCCGCGCU-----------AUGGACUUgGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 122926 0.73 0.523518
Target:  5'- --aGGGCGCGAUG-CUGAACCcggugguGGCGCa -3'
miRNA:   3'- aggUCCGCGCUAUgGACUUGG-------UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 47990 0.72 0.554894
Target:  5'- gUCCAGGCcgcacuGCGugGCCUGGAUCcGCGCg -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 54246 0.71 0.606528
Target:  5'- gUCC-GGCGCGuccggGCCgGGugCGGCGCu -3'
miRNA:   3'- -AGGuCCGCGCua---UGGaCUugGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.