miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 49299 0.76 0.359968
Target:  5'- cCCGGGCggaccgGCGAUACCUGGAggccauCCAGCGa -3'
miRNA:   3'- aGGUCCG------CGCUAUGGACUU------GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 15366 0.78 0.285418
Target:  5'- uUCCAGGCGCGcacucgGUACCUGGGaguGCACg -3'
miRNA:   3'- -AGGUCCGCGC------UAUGGACUUgguCGUG- -5'
25600 5' -55.7 NC_005337.1 + 37386 0.81 0.17805
Target:  5'- aCCAGGCGCGAcACCgugucgaaGAugCAGCACu -3'
miRNA:   3'- aGGUCCGCGCUaUGGa-------CUugGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 14702 0.69 0.724375
Target:  5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3'
miRNA:   3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 15210 0.67 0.813178
Target:  5'- gUCCAGGCugcgacacaccGCGAggaggucgaaccgguCCUGGcggcGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG-----------CGCUau-------------GGACU----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 42188 0.68 0.806916
Target:  5'- gUCCAGcuGCGCGuccaGCCgcuGCCGGUACa -3'
miRNA:   3'- -AGGUC--CGCGCua--UGGacuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 117515 0.68 0.806916
Target:  5'- cUCgAGGUGCucgACCUGAACaagguGCACg -3'
miRNA:   3'- -AGgUCCGCGcuaUGGACUUGgu---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 11624 0.68 0.806916
Target:  5'- gUCCAGcGUGCGGUagaaGCCcagGAACUucucgGGCGCg -3'
miRNA:   3'- -AGGUC-CGCGCUA----UGGa--CUUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53267 0.68 0.79783
Target:  5'- cCCGGacuucGCGCGcccgACgaUGAACCGGCACa -3'
miRNA:   3'- aGGUC-----CGCGCua--UGg-ACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 30275 0.68 0.779202
Target:  5'- gUCCAcGGCGCGcaggugagcGCCagGAcgGCCGGCACc -3'
miRNA:   3'- -AGGU-CCGCGCua-------UGGa-CU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 85873 0.68 0.769677
Target:  5'- gUCGGGCGCGAUcgggcacacggaGCCcu--CCAGCAUg -3'
miRNA:   3'- aGGUCCGCGCUA------------UGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 77150 0.68 0.760025
Target:  5'- gUCCAGGCugGCGGcgACCacgGGguacuGCCGGCGCc -3'
miRNA:   3'- -AGGUCCG--CGCUa-UGGa--CU-----UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 9639 0.68 0.760025
Target:  5'- cUCgCAGaGCGCGAUGCUgagcAGCCcGCGCg -3'
miRNA:   3'- -AG-GUC-CGCGCUAUGGac--UUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 16906 0.69 0.740379
Target:  5'- gUCCAGGaucu---UCUGGACCAGCACg -3'
miRNA:   3'- -AGGUCCgcgcuauGGACUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 74777 0.69 0.737396
Target:  5'- aCCGGGCGCGAcuucgacgccaucaUcuucACCggGGACCuGCGCc -3'
miRNA:   3'- aGGUCCGCGCU--------------A----UGGa-CUUGGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 31430 0.69 0.730403
Target:  5'- uUCCuGGCGCGcgGCCcG-ACCAugacGCGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGaCuUGGU----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 126940 0.66 0.894247
Target:  5'- -gCGGGCGCGG-ACgUGAACgC-GCGCg -3'
miRNA:   3'- agGUCCGCGCUaUGgACUUG-GuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38996 0.79 0.240848
Target:  5'- gCCGGGCGCuggggaaAUACCUGGGCCcGCGCg -3'
miRNA:   3'- aGGUCCGCGc------UAUGGACUUGGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.