miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 125627 0.67 0.815837
Target:  5'- gCCAGGCGCuGAaGCU----CCGGCACg -3'
miRNA:   3'- aGGUCCGCG-CUaUGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 20667 0.7 0.69383
Target:  5'- aCCAGGUGUGGUGCUUGGuguacuaaucuuuuCCGGCu- -3'
miRNA:   3'- aGGUCCGCGCUAUGGACUu-------------GGUCGug -5'
25600 5' -55.7 NC_005337.1 + 57262 0.73 0.514534
Target:  5'- gUUCGGGCaCGggGCCgcgcgGGGCCGGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGa----CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 100183 0.67 0.815837
Target:  5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3'
miRNA:   3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 106312 0.74 0.437843
Target:  5'- cUCCAGGUucCGGUGCUccucGAACCGGCGCa -3'
miRNA:   3'- -AGGUCCGc-GCUAUGGa---CUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 35758 0.66 0.872983
Target:  5'- gCUGGGCGCGA--CCgGGAUCguGGCGCg -3'
miRNA:   3'- aGGUCCGCGCUauGGaCUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 38514 0.72 0.53458
Target:  5'- cCCGGGCGC---GCCUGGugCAGgGCc -3'
miRNA:   3'- aGGUCCGCGcuaUGGACUugGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 102028 0.66 0.872238
Target:  5'- -gCGGGCGUGAUcgcguacGCCUGcuuCCcggAGCACg -3'
miRNA:   3'- agGUCCGCGCUA-------UGGACuu-GG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 132535 0.66 0.857678
Target:  5'- gUCCGGGCGg---GCCUGGACaucgacGCGCu -3'
miRNA:   3'- -AGGUCCGCgcuaUGGACUUGgu----CGUG- -5'
25600 5' -55.7 NC_005337.1 + 110246 0.66 0.8561
Target:  5'- gCCGGGCGUGAUcuuCgUGGuuacggacaugcCCGGCACg -3'
miRNA:   3'- aGGUCCGCGCUAu--GgACUu-----------GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 40197 0.67 0.849705
Target:  5'- cUCGGGUGCccgGCCgcagGGACCAGCcCg -3'
miRNA:   3'- aGGUCCGCGcuaUGGa---CUUGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 100094 0.67 0.83315
Target:  5'- gUCCGcGGCGCGccGCgUGGAgCuGCGCa -3'
miRNA:   3'- -AGGU-CCGCGCuaUGgACUUgGuCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86282 0.67 0.824584
Target:  5'- aUCCAGGCcacgcaGUGcgGCCUGGACgCGuccGCGCc -3'
miRNA:   3'- -AGGUCCG------CGCuaUGGACUUG-GU---CGUG- -5'
25600 5' -55.7 NC_005337.1 + 65419 0.68 0.78952
Target:  5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 131766 0.68 0.788589
Target:  5'- cUCCgAGGUGCGGcagcUG-CUGAGCCucGGCGCg -3'
miRNA:   3'- -AGG-UCCGCGCU----AUgGACUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 51682 0.68 0.760025
Target:  5'- gCCGGGCGUGAcggacACCgucuccaugGAGauCCAGCGCg -3'
miRNA:   3'- aGGUCCGCGCUa----UGGa--------CUU--GGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 52573 0.69 0.709179
Target:  5'- cUCCGcggggacGGCGCGGcgGCgCUGGcggccaagcagaGCCAGCACa -3'
miRNA:   3'- -AGGU-------CCGCGCUa-UG-GACU------------UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 82196 0.7 0.670073
Target:  5'- gCCGGGCGCGcacgGCCggcggucgaagagccGAACCAGCu- -3'
miRNA:   3'- aGGUCCGCGCua--UGGa--------------CUUGGUCGug -5'
25600 5' -55.7 NC_005337.1 + 3036 0.71 0.627371
Target:  5'- gUCCuuGCGCGA--CUcGAACCAGCGCa -3'
miRNA:   3'- -AGGucCGCGCUauGGaCUUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 72028 0.71 0.585763
Target:  5'- aCCuGGaguuCGCG-UACCUGuGCCGGCACa -3'
miRNA:   3'- aGGuCC----GCGCuAUGGACuUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.