miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25600 5' -55.7 NC_005337.1 + 58250 0.68 0.779202
Target:  5'- gUCCGGcGCgGCGGUcuuccGCgUGuACCGGCGCa -3'
miRNA:   3'- -AGGUC-CG-CGCUA-----UGgACuUGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 131766 0.68 0.788589
Target:  5'- cUCCgAGGUGCGGcagcUG-CUGAGCCucGGCGCg -3'
miRNA:   3'- -AGG-UCCGCGCU----AUgGACUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 11742 0.66 0.894247
Target:  5'- -gCAGcGCGCGucgccgcGCCaGGGCCAGCAg -3'
miRNA:   3'- agGUC-CGCGCua-----UGGaCUUGGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 52993 0.68 0.788589
Target:  5'- aUCAGGCGCGugcuCCUGuAGCggCGGCAUg -3'
miRNA:   3'- aGGUCCGCGCuau-GGAC-UUG--GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 65419 0.68 0.78952
Target:  5'- cUCC-GGCGCGggGCUgguggcgucgcggagGAGCCAGgGCg -3'
miRNA:   3'- -AGGuCCGCGCuaUGGa--------------CUUGGUCgUG- -5'
25600 5' -55.7 NC_005337.1 + 100183 0.67 0.815837
Target:  5'- aCgGGGUGCuGUcgaGCCUGGucACCAGCAUc -3'
miRNA:   3'- aGgUCCGCGcUA---UGGACU--UGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 24299 0.66 0.887392
Target:  5'- --aGGGCGUGGUGCUcGAgaaCAGCACc -3'
miRNA:   3'- aggUCCGCGCUAUGGaCUug-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 50599 0.66 0.880302
Target:  5'- cCCAGacCGCGAUcgacgACCUGcGCCGGCuGCu -3'
miRNA:   3'- aGGUCc-GCGCUA-----UGGACuUGGUCG-UG- -5'
25600 5' -55.7 NC_005337.1 + 35758 0.66 0.872983
Target:  5'- gCUGGGCGCGA--CCgGGAUCguGGCGCg -3'
miRNA:   3'- aGGUCCGCGCUauGGaCUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 2209 0.68 0.769677
Target:  5'- -gCGGGCGCG--GCCcGGGCCgcgAGCGCg -3'
miRNA:   3'- agGUCCGCGCuaUGGaCUUGG---UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 125627 0.67 0.815837
Target:  5'- gCCAGGCGCuGAaGCU----CCGGCACg -3'
miRNA:   3'- aGGUCCGCG-CUaUGGacuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 53699 0.66 0.887392
Target:  5'- gCCGGGCGCGu--CCUaaauAGCCcaugaAGCGCa -3'
miRNA:   3'- aGGUCCGCGCuauGGAc---UUGG-----UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 86186 0.67 0.819357
Target:  5'- cUCC-GGCGCGuccgugacgacGUACCUGAacagcuuggcgaaguGCCGGCuCa -3'
miRNA:   3'- -AGGuCCGCGC-----------UAUGGACU---------------UGGUCGuG- -5'
25600 5' -55.7 NC_005337.1 + 24386 0.67 0.815837
Target:  5'- gUCCGGGCGaccaGAUcACCaUGcuCCGGUGCa -3'
miRNA:   3'- -AGGUCCGCg---CUA-UGG-ACuuGGUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 5537 0.67 0.814952
Target:  5'- gUCCAGGCaCGccACCUcuuccacaucgggGAACgCAGCGCg -3'
miRNA:   3'- -AGGUCCGcGCuaUGGA-------------CUUG-GUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 55841 0.67 0.83315
Target:  5'- -aCGGGCGCGAcuucacACCaGAGcCCGGCAa -3'
miRNA:   3'- agGUCCGCGCUa-----UGGaCUU-GGUCGUg -5'
25600 5' -55.7 NC_005337.1 + 91192 0.69 0.72034
Target:  5'- cCCGGGCgccGCGAUGC--GGACgGGCGCg -3'
miRNA:   3'- aGGUCCG---CGCUAUGgaCUUGgUCGUG- -5'
25600 5' -55.7 NC_005337.1 + 14702 0.69 0.724375
Target:  5'- aCCAGGUGCgGGUACCUGcucuccacgacgcccAucGCCAGcCGCu -3'
miRNA:   3'- aGGUCCGCG-CUAUGGAC---------------U--UGGUC-GUG- -5'
25600 5' -55.7 NC_005337.1 + 877 0.66 0.894247
Target:  5'- gCCGGGCGgaaGAgcgcGCCgagcagGAGCCcgAGCGCg -3'
miRNA:   3'- aGGUCCGCg--CUa---UGGa-----CUUGG--UCGUG- -5'
25600 5' -55.7 NC_005337.1 + 17793 0.66 0.894247
Target:  5'- cUCCAGGCGCGucugucGCgUGAAguacuCCucgauGCGCg -3'
miRNA:   3'- -AGGUCCGCGCua----UGgACUU-----GGu----CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.