miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25604 5' -55.4 NC_005337.1 + 93303 0.66 0.918072
Target:  5'- cGGGAcugcgUGGcGCUGUaccCGGGCUUCACGu -3'
miRNA:   3'- -CCUUca---ACU-CGACGa--GCCCGAGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 95626 0.66 0.918072
Target:  5'- cGGGu-UUGAGCgaugccagggGCaCGGGCUCCAgGg -3'
miRNA:   3'- -CCUucAACUCGa---------CGaGCCCGAGGUgC- -5'
25604 5' -55.4 NC_005337.1 + 127450 0.66 0.912183
Target:  5'- cGGAGGaUGAGguccgccgcCUGCUCGGGg-CCGgGg -3'
miRNA:   3'- -CCUUCaACUC---------GACGAGCCCgaGGUgC- -5'
25604 5' -55.4 NC_005337.1 + 9344 0.66 0.912183
Target:  5'- cGGAGGgacuGCUG-UCGGGgUCCAgGg -3'
miRNA:   3'- -CCUUCaacuCGACgAGCCCgAGGUgC- -5'
25604 5' -55.4 NC_005337.1 + 38502 0.66 0.906052
Target:  5'- aGGAGGU--GGCcGCcCGGGCgcgCCugGu -3'
miRNA:   3'- -CCUUCAacUCGaCGaGCCCGa--GGugC- -5'
25604 5' -55.4 NC_005337.1 + 35200 0.67 0.87916
Target:  5'- uGAuGUUgGAGCaGCUCGGGUaCUGCGa -3'
miRNA:   3'- cCUuCAA-CUCGaCGAGCCCGaGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 95501 0.67 0.871863
Target:  5'- ------cGGGC-GCgUCGGGCUCCACc -3'
miRNA:   3'- ccuucaaCUCGaCG-AGCCCGAGGUGc -5'
25604 5' -55.4 NC_005337.1 + 39852 0.67 0.864347
Target:  5'- cGGAGUgcuGCUGCUCGc-CUCCGCGu -3'
miRNA:   3'- cCUUCAacuCGACGAGCccGAGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 86764 0.67 0.856617
Target:  5'- cGAAGUUGAGgaUGUaCGGGUUCaGCGa -3'
miRNA:   3'- cCUUCAACUCg-ACGaGCCCGAGgUGC- -5'
25604 5' -55.4 NC_005337.1 + 110622 0.67 0.855833
Target:  5'- aGGAAGgaGAuguacucGC-GCUCGGGCagcaCCGCGa -3'
miRNA:   3'- -CCUUCaaCU-------CGaCGAGCCCGa---GGUGC- -5'
25604 5' -55.4 NC_005337.1 + 49814 0.67 0.848679
Target:  5'- cGGAGGUgccGGCcGCgcccuccgCGGGCUCCuCGu -3'
miRNA:   3'- -CCUUCAac-UCGaCGa-------GCCCGAGGuGC- -5'
25604 5' -55.4 NC_005337.1 + 125511 0.68 0.843819
Target:  5'- uGGAGGUcgUGcGGCUGCUCGuGCgguacggcgccgacaUCCGCGc -3'
miRNA:   3'- -CCUUCA--AC-UCGACGAGCcCG---------------AGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 11746 0.68 0.84054
Target:  5'- aGAAGggGAc---CUUGGGCUCCACGa -3'
miRNA:   3'- cCUUCaaCUcgacGAGCCCGAGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 60284 0.68 0.823689
Target:  5'- cGGggGUggGAGUggGCUUGGGgUCguCGg -3'
miRNA:   3'- -CCuuCAa-CUCGa-CGAGCCCgAGguGC- -5'
25604 5' -55.4 NC_005337.1 + 82741 0.68 0.814992
Target:  5'- cGGAGcagcGAGUgUGCgauggUGGGCUCCACGa -3'
miRNA:   3'- -CCUUcaa-CUCG-ACGa----GCCCGAGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 79127 0.69 0.778594
Target:  5'- aGAGGUUGAuGCUGCU-GGaGUUCgACGa -3'
miRNA:   3'- cCUUCAACU-CGACGAgCC-CGAGgUGC- -5'
25604 5' -55.4 NC_005337.1 + 105212 0.69 0.759554
Target:  5'- uGGggGccgcUGAGCUGCgcgcucgCGGGCgCC-CGg -3'
miRNA:   3'- -CCuuCa---ACUCGACGa------GCCCGaGGuGC- -5'
25604 5' -55.4 NC_005337.1 + 23062 0.69 0.759554
Target:  5'- aGGAuGgcgcucgUGGGCgGCUCGGGgUCCGgGa -3'
miRNA:   3'- -CCUuCa------ACUCGaCGAGCCCgAGGUgC- -5'
25604 5' -55.4 NC_005337.1 + 74240 0.7 0.710101
Target:  5'- gGGAGGgcGGGUcGCcgcgCGGGuCUCCGCGc -3'
miRNA:   3'- -CCUUCaaCUCGaCGa---GCCC-GAGGUGC- -5'
25604 5' -55.4 NC_005337.1 + 30593 0.7 0.688758
Target:  5'- aGGAGGcaUUGcAGCUGCgagCGGGagagcuuCUCCGCGc -3'
miRNA:   3'- -CCUUC--AAC-UCGACGa--GCCC-------GAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.