miRNA display CGI


Results 1 - 20 of 245 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25612 3' -56.4 NC_005337.1 + 43696 0.66 0.900968
Target:  5'- -gGUUCCGGGuCCacgUGAgcucguccguguacgGCAgCCGGCGCCa -3'
miRNA:   3'- ugUAGGGCCU-GG---ACU---------------UGU-GGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 42652 0.66 0.898414
Target:  5'- cACAUCCuCGGGCCgcccGAGaucggcuuCCG-CGCCc -3'
miRNA:   3'- -UGUAGG-GCCUGGa---CUUgu------GGCuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 53054 0.66 0.898414
Target:  5'- aACggCCUGGuCUcGGACACCGACuaCg -3'
miRNA:   3'- -UGuaGGGCCuGGaCUUGUGGCUGcgG- -5'
25612 3' -56.4 NC_005337.1 + 38307 0.66 0.898414
Target:  5'- -uGUCCaagguGGAggUGAucgacACGCCGGCGCCg -3'
miRNA:   3'- ugUAGGg----CCUggACU-----UGUGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 14442 0.66 0.898414
Target:  5'- gGCG-CCgGGuACC-GAGCGCCG-CGCUg -3'
miRNA:   3'- -UGUaGGgCC-UGGaCUUGUGGCuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 78533 0.66 0.898414
Target:  5'- uCGUCCUggauGGACCcGuACACgGGCGCg -3'
miRNA:   3'- uGUAGGG----CCUGGaCuUGUGgCUGCGg -5'
25612 3' -56.4 NC_005337.1 + 82611 0.66 0.898414
Target:  5'- gGCGUCCagGGGCgacggcGGGCGCUGGCGaCCg -3'
miRNA:   3'- -UGUAGGg-CCUGga----CUUGUGGCUGC-GG- -5'
25612 3' -56.4 NC_005337.1 + 97679 0.66 0.898414
Target:  5'- cACAUggUGGAUCUGcACGCCG-CGCUg -3'
miRNA:   3'- -UGUAggGCCUGGACuUGUGGCuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 51678 0.66 0.898414
Target:  5'- uCAUgCCGGGCgUGAcggACACCGuCuCCa -3'
miRNA:   3'- uGUAgGGCCUGgACU---UGUGGCuGcGG- -5'
25612 3' -56.4 NC_005337.1 + 122943 0.66 0.898414
Target:  5'- cCAUCCCcGGCC---GCGaCGACGCCg -3'
miRNA:   3'- uGUAGGGcCUGGacuUGUgGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 105529 0.66 0.898414
Target:  5'- gGCcgCCaUGGACgCgacugGAACGgUGGCGCCa -3'
miRNA:   3'- -UGuaGG-GCCUG-Ga----CUUGUgGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 66535 0.66 0.898414
Target:  5'- ----gCUGGAgCUGcGCGCCG-CGCCg -3'
miRNA:   3'- uguagGGCCUgGACuUGUGGCuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 6352 0.66 0.898414
Target:  5'- cGCGUCCgCGuACUUGcccAGCACCGGCucgGCCc -3'
miRNA:   3'- -UGUAGG-GCcUGGAC---UUGUGGCUG---CGG- -5'
25612 3' -56.4 NC_005337.1 + 76820 0.66 0.898414
Target:  5'- uGCAUCUCGGAgggcaUGcuCGCgGugGCCg -3'
miRNA:   3'- -UGUAGGGCCUgg---ACuuGUGgCugCGG- -5'
25612 3' -56.4 NC_005337.1 + 77147 0.66 0.89777
Target:  5'- gGCGUCCaggcuggCGGcgACCacgGggUacuGCCGGCGCCa -3'
miRNA:   3'- -UGUAGG-------GCC--UGGa--CuuG---UGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 16516 0.66 0.897123
Target:  5'- ---aCCCGGGCCaagaccaacggaGAGCAggcgugUCGGCGCCa -3'
miRNA:   3'- uguaGGGCCUGGa-----------CUUGU------GGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 123522 0.66 0.894515
Target:  5'- uACAUCCCcGAguccagcagccccuuCCUcGACAuccuCCGGCGCCg -3'
miRNA:   3'- -UGUAGGGcCU---------------GGAcUUGU----GGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 84955 0.66 0.891869
Target:  5'- -gGUCCCGGAUCUGcaGGgGCU--CGCCg -3'
miRNA:   3'- ugUAGGGCCUGGAC--UUgUGGcuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 1198 0.66 0.891869
Target:  5'- uGCAUCCa-GGC--GGcCACCGGCGCCg -3'
miRNA:   3'- -UGUAGGgcCUGgaCUuGUGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 97583 0.66 0.891869
Target:  5'- gACGUgcaCCGGAacaagcucauCgUGGACACgGugGCCg -3'
miRNA:   3'- -UGUAg--GGCCU----------GgACUUGUGgCugCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.