miRNA display CGI


Results 21 - 40 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25612 3' -56.4 NC_005337.1 + 84955 0.66 0.891869
Target:  5'- -gGUCCCGGAUCUGcaGGgGCU--CGCCg -3'
miRNA:   3'- ugUAGGGCCUGGAC--UUgUGGcuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 130531 0.66 0.891869
Target:  5'- --uUCCUGGugC---GCGCgGGCGCCa -3'
miRNA:   3'- uguAGGGCCugGacuUGUGgCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 124512 0.66 0.891869
Target:  5'- gGCAUCgCGacgauACC--GACAUCGACGCCa -3'
miRNA:   3'- -UGUAGgGCc----UGGacUUGUGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 87758 0.66 0.891869
Target:  5'- gGC-UCCUcgaaGGAgCcGAACuCCGGCGCCg -3'
miRNA:   3'- -UGuAGGG----CCUgGaCUUGuGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 94078 0.66 0.891869
Target:  5'- -gGUCCCuGcGGCC-GGGCACCcgaggggcggugGACGCCu -3'
miRNA:   3'- ugUAGGG-C-CUGGaCUUGUGG------------CUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 117726 0.66 0.891869
Target:  5'- gGCGUCgCGGuaguuaCUG-GCGCCGAcaCGCCu -3'
miRNA:   3'- -UGUAGgGCCug----GACuUGUGGCU--GCGG- -5'
25612 3' -56.4 NC_005337.1 + 70732 0.66 0.891869
Target:  5'- gACAgUCCGG-CaaacGAGCGCCGcACGCCc -3'
miRNA:   3'- -UGUaGGGCCuGga--CUUGUGGC-UGCGG- -5'
25612 3' -56.4 NC_005337.1 + 52378 0.66 0.891869
Target:  5'- gACGgcUgCgGGGCCgUGGACGCCuuCGCCa -3'
miRNA:   3'- -UGU--AgGgCCUGG-ACUUGUGGcuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 49050 0.66 0.891869
Target:  5'- cCAUCCUGGccgccgucuucGCCUGGuACGCCaggcgGAUGCUg -3'
miRNA:   3'- uGUAGGGCC-----------UGGACU-UGUGG-----CUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 55932 0.66 0.891869
Target:  5'- gGCAUCCUGGAggacGGACGCgUGGuCGCCg -3'
miRNA:   3'- -UGUAGGGCCUgga-CUUGUG-GCU-GCGG- -5'
25612 3' -56.4 NC_005337.1 + 2925 0.66 0.891869
Target:  5'- gGCGUCgCCGGaguGCCgacGCGCaCGGCGCg -3'
miRNA:   3'- -UGUAG-GGCC---UGGacuUGUG-GCUGCGg -5'
25612 3' -56.4 NC_005337.1 + 97583 0.66 0.891869
Target:  5'- gACGUgcaCCGGAacaagcucauCgUGGACACgGugGCCg -3'
miRNA:   3'- -UGUAg--GGCCU----------GgACUUGUGgCugCGG- -5'
25612 3' -56.4 NC_005337.1 + 25003 0.66 0.891203
Target:  5'- gACGaCCCGcucguacGACUUGAuguucgugagGCGCCGuCGCCa -3'
miRNA:   3'- -UGUaGGGC-------CUGGACU----------UGUGGCuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 44723 0.66 0.891203
Target:  5'- uGCggCCgGGACCUcuccaacGAGCGCUucCGCCu -3'
miRNA:   3'- -UGuaGGgCCUGGA-------CUUGUGGcuGCGG- -5'
25612 3' -56.4 NC_005337.1 + 5237 0.66 0.887834
Target:  5'- cGCGUgCUCGGACUgcgUGAugaaguagucguacaGCGCCGACuCCg -3'
miRNA:   3'- -UGUA-GGGCCUGG---ACU---------------UGUGGCUGcGG- -5'
25612 3' -56.4 NC_005337.1 + 87890 0.66 0.885099
Target:  5'- cGCGgca-GGACCUGGcugacGCGCUGGCGCg -3'
miRNA:   3'- -UGUagggCCUGGACU-----UGUGGCUGCGg -5'
25612 3' -56.4 NC_005337.1 + 100649 0.66 0.885099
Target:  5'- gAUAUaCgUGGGCCUGAaggAC-CCGGCGUCc -3'
miRNA:   3'- -UGUA-GgGCCUGGACU---UGuGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 89203 0.66 0.885099
Target:  5'- cACGUCggcaCGGAUCUccgGCcgGCCGGCGCCc -3'
miRNA:   3'- -UGUAGg---GCCUGGAcu-UG--UGGCUGCGG- -5'
25612 3' -56.4 NC_005337.1 + 102774 0.66 0.885099
Target:  5'- aGCAUCCaC-GugCUGAccACGCCGgguucaaccACGCCu -3'
miRNA:   3'- -UGUAGG-GcCugGACU--UGUGGC---------UGCGG- -5'
25612 3' -56.4 NC_005337.1 + 126247 0.66 0.885099
Target:  5'- cGCAaggCCgUGGACCUGcugAgCGACGCCg -3'
miRNA:   3'- -UGUa--GG-GCCUGGACuugUgGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.