miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25612 5' -61.5 NC_005337.1 + 47650 0.66 0.669544
Target:  5'- cCGGGUacuacGUGGUGCaCUGCUGCGAGg -3'
miRNA:   3'- -GCCCGcac--CACCACG-GGCGGUGCUUg -5'
25612 5' -61.5 NC_005337.1 + 9278 0.66 0.669544
Target:  5'- uGaGGCuGUGGaUGGUGCUCcggcaguagcugGCgGCGAACg -3'
miRNA:   3'- gC-CCG-CACC-ACCACGGG------------CGgUGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 54109 0.66 0.659657
Target:  5'- aCGGGCGcUGcuacGUGGagcgcgacgGCCgCGCCGCGcGCa -3'
miRNA:   3'- -GCCCGC-AC----CACCa--------CGG-GCGGUGCuUG- -5'
25612 5' -61.5 NC_005337.1 + 63213 0.66 0.659657
Target:  5'- aCGGcGCGgcgcaGGUGcaUGUUCGCCACGAAg -3'
miRNA:   3'- -GCC-CGCa----CCACc-ACGGGCGGUGCUUg -5'
25612 5' -61.5 NC_005337.1 + 6202 0.66 0.658667
Target:  5'- uCGGGCGcggcgacugcaugUGGUGGUGCagcagcguguccCCG-CGCGAGu -3'
miRNA:   3'- -GCCCGC-------------ACCACCACG------------GGCgGUGCUUg -5'
25612 5' -61.5 NC_005337.1 + 83941 0.66 0.653715
Target:  5'- cCGGGCGgcgGGUaccGGgcgGUCCGCgcagggcagcggcggCGCGGGCg -3'
miRNA:   3'- -GCCCGCa--CCA---CCa--CGGGCG---------------GUGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 50232 0.66 0.653715
Target:  5'- aGGGCGUcGUGcgcgccuccgccgguGUGuCCCGCCGCaGAAg -3'
miRNA:   3'- gCCCGCAcCAC---------------CAC-GGGCGGUG-CUUg -5'
25612 5' -61.5 NC_005337.1 + 59199 0.66 0.64975
Target:  5'- -cGGCGacggcUGGaUGGUGCagaagGCCGCGGACa -3'
miRNA:   3'- gcCCGC-----ACC-ACCACGgg---CGGUGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 30946 0.66 0.64975
Target:  5'- gCGGGCG-GGUGaGccGCCCGgCGcCGAAg -3'
miRNA:   3'- -GCCCGCaCCAC-Ca-CGGGCgGU-GCUUg -5'
25612 5' -61.5 NC_005337.1 + 47597 0.66 0.64975
Target:  5'- uGGGCGUGGgcgacGCCgCGCgCGCGGccGCg -3'
miRNA:   3'- gCCCGCACCacca-CGG-GCG-GUGCU--UG- -5'
25612 5' -61.5 NC_005337.1 + 40544 0.66 0.633874
Target:  5'- gCGGcGCGcGGUGGUGCgguucucgaggauguCCuCCAUGGACc -3'
miRNA:   3'- -GCC-CGCaCCACCACG---------------GGcGGUGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 110385 0.66 0.629903
Target:  5'- aCGGGCGUGG-GGuUGCUgaUGCgCGUGAACc -3'
miRNA:   3'- -GCCCGCACCaCC-ACGG--GCG-GUGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 65661 0.66 0.629903
Target:  5'- uGGaguuCGaGGUGGUGCCCaGCgGCGAGa -3'
miRNA:   3'- gCCc---GCaCCACCACGGG-CGgUGCUUg -5'
25612 5' -61.5 NC_005337.1 + 116617 0.66 0.629903
Target:  5'- gCGGcGCGUGGacGUgucGCCCGCCAaaGACc -3'
miRNA:   3'- -GCC-CGCACCacCA---CGGGCGGUgcUUG- -5'
25612 5' -61.5 NC_005337.1 + 128641 0.66 0.628911
Target:  5'- uGGGCGUGGUGcUGUUCaacuucgGCCAC-AACg -3'
miRNA:   3'- gCCCGCACCACcACGGG-------CGGUGcUUG- -5'
25612 5' -61.5 NC_005337.1 + 81030 0.66 0.619979
Target:  5'- aCGGGcCGUaucUGGUGCCUGuCCAUGAu- -3'
miRNA:   3'- -GCCC-GCAcc-ACCACGGGC-GGUGCUug -5'
25612 5' -61.5 NC_005337.1 + 34396 0.66 0.614028
Target:  5'- aGGaGCGUGGcGGUGCuCCagggcaggcccgaccGCCugGCGGGCg -3'
miRNA:   3'- gCC-CGCACCaCCACG-GG---------------CGG--UGCUUG- -5'
25612 5' -61.5 NC_005337.1 + 89187 0.66 0.610063
Target:  5'- aGGGgGUGccgGGcGCUCGCCGCccGAGCa -3'
miRNA:   3'- gCCCgCACca-CCaCGGGCGGUG--CUUG- -5'
25612 5' -61.5 NC_005337.1 + 82285 0.66 0.610063
Target:  5'- -cGGCGUcguaGUGGUGcCCCGCCGCc--- -3'
miRNA:   3'- gcCCGCAc---CACCAC-GGGCGGUGcuug -5'
25612 5' -61.5 NC_005337.1 + 109607 0.66 0.610063
Target:  5'- uCGcGGCGgaaGGccucGGUGUCCaggaagGCCGCGAGCg -3'
miRNA:   3'- -GC-CCGCa--CCa---CCACGGG------CGGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.