miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25614 3' -50.8 NC_005337.1 + 38466 0.66 0.99252
Target:  5'- gCCUUCaUGCGGUGCGcG-CCGGGcGCGc -3'
miRNA:   3'- -GGAGG-ACGUCAUGCaCaGGUUCuUGU- -5'
25614 3' -50.8 NC_005337.1 + 61720 0.66 0.991974
Target:  5'- uCCUCCUGgAGccgggacaugcgGCaguagaccacgcggGUGUCCAGGAACc -3'
miRNA:   3'- -GGAGGACgUCa-----------UG--------------CACAGGUUCUUGu -5'
25614 3' -50.8 NC_005337.1 + 68470 0.66 0.991035
Target:  5'- aUCUCCUGCuucugcagcaugacGGUGCGca-CCGGGGGCGc -3'
miRNA:   3'- -GGAGGACG--------------UCAUGCacaGGUUCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 72852 0.66 0.990144
Target:  5'- uUCUCCUGCGGc---UGUCCGcGAACc -3'
miRNA:   3'- -GGAGGACGUCaugcACAGGUuCUUGu -5'
25614 3' -50.8 NC_005337.1 + 33766 0.66 0.990012
Target:  5'- gCUCCUcguccacGCAGUACaugcUGUCCuuGAGCGa -3'
miRNA:   3'- gGAGGA-------CGUCAUGc---ACAGGuuCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 22171 0.66 0.990012
Target:  5'- gCUCCUGCAgaaggccgggcccGUGCGgcacagcgGgcucaCCGAGAGCAu -3'
miRNA:   3'- gGAGGACGU-------------CAUGCa-------Ca----GGUUCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 90708 0.66 0.990012
Target:  5'- aCCUCCUucagcgcGCGGUcggggucgcaGCG-GUCCAcgacgcGGAGCAg -3'
miRNA:   3'- -GGAGGA-------CGUCA----------UGCaCAGGU------UCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 69105 0.66 0.988753
Target:  5'- cUCUCCUGcCGGgaggGCGaGaCCAAGAGCc -3'
miRNA:   3'- -GGAGGAC-GUCa---UGCaCaGGUUCUUGu -5'
25614 3' -50.8 NC_005337.1 + 81682 0.66 0.988753
Target:  5'- gCUCCUGgaAGUGCGaGUgCAGGcAGCAg -3'
miRNA:   3'- gGAGGACg-UCAUGCaCAgGUUC-UUGU- -5'
25614 3' -50.8 NC_005337.1 + 40726 0.66 0.988753
Target:  5'- gCCgagaCCgUGCAGgcCGUGUCCAAcuGCGg -3'
miRNA:   3'- -GGa---GG-ACGUCauGCACAGGUUcuUGU- -5'
25614 3' -50.8 NC_005337.1 + 113668 0.66 0.987214
Target:  5'- uCCUCCUGUGGacACGUcGUCCGAccGAAa- -3'
miRNA:   3'- -GGAGGACGUCa-UGCA-CAGGUU--CUUgu -5'
25614 3' -50.8 NC_005337.1 + 123998 0.66 0.987214
Target:  5'- cCCUCC-GcCAGgAUGgugGUCCGGGAGCu -3'
miRNA:   3'- -GGAGGaC-GUCaUGCa--CAGGUUCUUGu -5'
25614 3' -50.8 NC_005337.1 + 23462 0.67 0.983653
Target:  5'- gCUgCUGCA--ACGUGUCCGacuccgacguggAGAACGu -3'
miRNA:   3'- gGAgGACGUcaUGCACAGGU------------UCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 66554 0.67 0.981613
Target:  5'- aCCUCCUGCGcccGCG-GcCCGAGAAg- -3'
miRNA:   3'- -GGAGGACGUca-UGCaCaGGUUCUUgu -5'
25614 3' -50.8 NC_005337.1 + 2899 0.67 0.981613
Target:  5'- uCCggCUGCAG-ACcacGUCCAGGAGCGg -3'
miRNA:   3'- -GGagGACGUCaUGca-CAGGUUCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 2053 0.67 0.981399
Target:  5'- uCCUCCcucgggaUGgAGgcgaGCGUGUCCGcGAGCGc -3'
miRNA:   3'- -GGAGG-------ACgUCa---UGCACAGGUuCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 116315 0.67 0.979388
Target:  5'- cCCUCCauggaGCGGUGCGUGcugCUgcGGGCGc -3'
miRNA:   3'- -GGAGGa----CGUCAUGCACa--GGuuCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 117624 0.67 0.979155
Target:  5'- aCCUCCUcaGGUACGUGauUCCAaaaaacaggaagcAGAACc -3'
miRNA:   3'- -GGAGGAcgUCAUGCAC--AGGU-------------UCUUGu -5'
25614 3' -50.8 NC_005337.1 + 24840 0.68 0.965192
Target:  5'- gCUCgaGCGGcGCGUGcUCGAGGACGu -3'
miRNA:   3'- gGAGgaCGUCaUGCACaGGUUCUUGU- -5'
25614 3' -50.8 NC_005337.1 + 101697 0.69 0.945231
Target:  5'- uCUUCCgGCAGUGCaccGUGUCgGAGGcccGCAc -3'
miRNA:   3'- -GGAGGaCGUCAUG---CACAGgUUCU---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.