miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25614 5' -51.9 NC_005337.1 + 45918 0.71 0.85163
Target:  5'- cCCcCUUUggaCCAGGAAGUcgcagaGCCUGGAGa -3'
miRNA:   3'- aGGcGAAGa--GGUUCUUCA------UGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 126762 0.71 0.843332
Target:  5'- cCUGCU-CUUCA---GGUACCUGGAGa -3'
miRNA:   3'- aGGCGAaGAGGUucuUCAUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 116421 0.71 0.85163
Target:  5'- gCCGCUUCUUCAAGAAGcucggcggguCCgagaaGGAGa -3'
miRNA:   3'- aGGCGAAGAGGUUCUUCau--------GGa----CCUC- -5'
25614 5' -51.9 NC_005337.1 + 26277 0.72 0.78948
Target:  5'- cCCGCc-CUCguAGAAGUACUUGGAc -3'
miRNA:   3'- aGGCGaaGAGguUCUUCAUGGACCUc -5'
25614 5' -51.9 NC_005337.1 + 12723 0.74 0.678055
Target:  5'- gCCGCg-CUCgAGGAGGUGCC-GGAGg -3'
miRNA:   3'- aGGCGaaGAGgUUCUUCAUGGaCCUC- -5'
25614 5' -51.9 NC_005337.1 + 48824 0.74 0.671713
Target:  5'- cUCGCUgcUCUCCGacaaggagaagcucaAGGAGUACCgGGAGa -3'
miRNA:   3'- aGGCGA--AGAGGU---------------UCUUCAUGGaCCUC- -5'
25614 5' -51.9 NC_005337.1 + 28809 0.77 0.530383
Target:  5'- aCCGCgaggCCGGGAAGcACCUGGAGc -3'
miRNA:   3'- aGGCGaagaGGUUCUUCaUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 70753 0.8 0.362542
Target:  5'- aCCGCUUCUCCAGGGAGgaguacgaggccgcgGCCgacucGGAGg -3'
miRNA:   3'- aGGCGAAGAGGUUCUUCa--------------UGGa----CCUC- -5'
25614 5' -51.9 NC_005337.1 + 50339 0.8 0.353485
Target:  5'- aUCCGCUUCUCCAAGAAccccacGCCggcGGAGa -3'
miRNA:   3'- -AGGCGAAGAGGUUCUUca----UGGa--CCUC- -5'
25614 5' -51.9 NC_005337.1 + 72009 1.1 0.005505
Target:  5'- aUCCGCUUCUCCAAGAAGUACCUGGAGu -3'
miRNA:   3'- -AGGCGAAGAGGUUCUUCAUGGACCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.