Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25614 | 5' | -51.9 | NC_005337.1 | + | 72141 | 0.68 | 0.947404 |
Target: 5'- aUCCGCgacUUCCuggacgugAAGAAGguguuCCUGGAGg -3' miRNA: 3'- -AGGCGaa-GAGG--------UUCUUCau---GGACCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 48283 | 0.69 | 0.921792 |
Target: 5'- cCCGCUUCUacgaCAucagccGGGAGUACCUccagcGGGGc -3' miRNA: 3'- aGGCGAAGAg---GU------UCUUCAUGGA-----CCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 88903 | 0.7 | 0.882603 |
Target: 5'- gCCGUc-CUCCAGGAAGU-CCUGGc- -3' miRNA: 3'- aGGCGaaGAGGUUCUUCAuGGACCuc -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 116421 | 0.71 | 0.85163 |
Target: 5'- gCCGCUUCUUCAAGAAGcucggcggguCCgagaaGGAGa -3' miRNA: 3'- aGGCGAAGAGGUUCUUCau--------GGa----CCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 126762 | 0.71 | 0.843332 |
Target: 5'- cCUGCU-CUUCA---GGUACCUGGAGa -3' miRNA: 3'- aGGCGAaGAGGUucuUCAUGGACCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 12723 | 0.74 | 0.678055 |
Target: 5'- gCCGCg-CUCgAGGAGGUGCC-GGAGg -3' miRNA: 3'- aGGCGaaGAGgUUCUUCAUGGaCCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 48824 | 0.74 | 0.671713 |
Target: 5'- cUCGCUgcUCUCCGacaaggagaagcucaAGGAGUACCgGGAGa -3' miRNA: 3'- aGGCGA--AGAGGU---------------UCUUCAUGGaCCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 28809 | 0.77 | 0.530383 |
Target: 5'- aCCGCgaggCCGGGAAGcACCUGGAGc -3' miRNA: 3'- aGGCGaagaGGUUCUUCaUGGACCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 72009 | 1.1 | 0.005505 |
Target: 5'- aUCCGCUUCUCCAAGAAGUACCUGGAGu -3' miRNA: 3'- -AGGCGAAGAGGUUCUUCAUGGACCUC- -5' |
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25614 | 5' | -51.9 | NC_005337.1 | + | 99650 | 0.66 | 0.980425 |
Target: 5'- cCCGCcgUCUUCAacgaggagcaGGAGGUccgcgGCCUGGGc -3' miRNA: 3'- aGGCGa-AGAGGU----------UCUUCA-----UGGACCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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