miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25614 5' -51.9 NC_005337.1 + 2398 0.66 0.98256
Target:  5'- cCCGC--CUCCAGGAGGcagcggacgACCUcGGGGu -3'
miRNA:   3'- aGGCGaaGAGGUUCUUCa--------UGGA-CCUC- -5'
25614 5' -51.9 NC_005337.1 + 12723 0.74 0.678055
Target:  5'- gCCGCg-CUCgAGGAGGUGCC-GGAGg -3'
miRNA:   3'- aGGCGaaGAGgUUCUUCAUGGaCCUC- -5'
25614 5' -51.9 NC_005337.1 + 19974 0.67 0.969909
Target:  5'- gCCGCgagagcucCUCCAGGAGGU-CCUcGGGc -3'
miRNA:   3'- aGGCGaa------GAGGUUCUUCAuGGA-CCUc -5'
25614 5' -51.9 NC_005337.1 + 20061 0.66 0.972851
Target:  5'- -gCGCguacaUCuUCCGagGGAGGUGCUUGGGGu -3'
miRNA:   3'- agGCGa----AG-AGGU--UCUUCAUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 26277 0.72 0.78948
Target:  5'- cCCGCc-CUCguAGAAGUACUUGGAc -3'
miRNA:   3'- aGGCGaaGAGguUCUUCAUGGACCUc -5'
25614 5' -51.9 NC_005337.1 + 28809 0.77 0.530383
Target:  5'- aCCGCgaggCCGGGAAGcACCUGGAGc -3'
miRNA:   3'- aGGCGaagaGGUUCUUCaUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 36995 0.68 0.937931
Target:  5'- cUCCGCggUCUCCAGccgcGggG-ACgUGGGGu -3'
miRNA:   3'- -AGGCGa-AGAGGUU----CuuCaUGgACCUC- -5'
25614 5' -51.9 NC_005337.1 + 38487 0.66 0.977365
Target:  5'- gCCGCUUcCUCUcgaAGGAGGUggccgcccgggcgcGCCUGGuGc -3'
miRNA:   3'- aGGCGAA-GAGG---UUCUUCA--------------UGGACCuC- -5'
25614 5' -51.9 NC_005337.1 + 45918 0.71 0.85163
Target:  5'- cCCcCUUUggaCCAGGAAGUcgcagaGCCUGGAGa -3'
miRNA:   3'- aGGcGAAGa--GGUUCUUCA------UGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 47297 0.69 0.903333
Target:  5'- cUCCGCggCUUCAAGAAGcGCgUGGu- -3'
miRNA:   3'- -AGGCGaaGAGGUUCUUCaUGgACCuc -5'
25614 5' -51.9 NC_005337.1 + 48283 0.69 0.921792
Target:  5'- cCCGCUUCUacgaCAucagccGGGAGUACCUccagcGGGGc -3'
miRNA:   3'- aGGCGAAGAg---GU------UCUUCAUGGA-----CCUC- -5'
25614 5' -51.9 NC_005337.1 + 48824 0.74 0.671713
Target:  5'- cUCGCUgcUCUCCGacaaggagaagcucaAGGAGUACCgGGAGa -3'
miRNA:   3'- aGGCGA--AGAGGU---------------UCUUCAUGGaCCUC- -5'
25614 5' -51.9 NC_005337.1 + 49756 0.67 0.969909
Target:  5'- gCCGgUgcgugcggaacaUgUCCAcGAAGUGCUUGGAGa -3'
miRNA:   3'- aGGCgA------------AgAGGUuCUUCAUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 50339 0.8 0.353485
Target:  5'- aUCCGCUUCUCCAAGAAccccacGCCggcGGAGa -3'
miRNA:   3'- -AGGCGAAGAGGUUCUUca----UGGa--CCUC- -5'
25614 5' -51.9 NC_005337.1 + 65479 0.66 0.976612
Target:  5'- aUUCGUcgaCUUCAAGAAGUACCucucggccauccgcgUGGAGc -3'
miRNA:   3'- -AGGCGaa-GAGGUUCUUCAUGG---------------ACCUC- -5'
25614 5' -51.9 NC_005337.1 + 67047 0.66 0.9781
Target:  5'- aUCCGC---UCCGAGAccUACgUGGAGa -3'
miRNA:   3'- -AGGCGaagAGGUUCUucAUGgACCUC- -5'
25614 5' -51.9 NC_005337.1 + 70753 0.8 0.362542
Target:  5'- aCCGCUUCUCCAGGGAGgaguacgaggccgcgGCCgacucGGAGg -3'
miRNA:   3'- aGGCGAAGAGGUUCUUCa--------------UGGa----CCUC- -5'
25614 5' -51.9 NC_005337.1 + 72009 1.1 0.005505
Target:  5'- aUCCGCUUCUCCAAGAAGUACCUGGAGu -3'
miRNA:   3'- -AGGCGAAGAGGUUCUUCAUGGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 72141 0.68 0.947404
Target:  5'- aUCCGCgacUUCCuggacgugAAGAAGguguuCCUGGAGg -3'
miRNA:   3'- -AGGCGaa-GAGG--------UUCUUCau---GGACCUC- -5'
25614 5' -51.9 NC_005337.1 + 77700 0.67 0.959733
Target:  5'- cUCGC-UCUCCAcGggGU-CCcGGAGg -3'
miRNA:   3'- aGGCGaAGAGGUuCuuCAuGGaCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.