Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25617 | 5' | -52.8 | NC_005337.1 | + | 70610 | 1.09 | 0.005412 |
Target: 5'- cCGAGGCGCCGUUGCCUAUUUAGGACGc -3' miRNA: 3'- -GCUCCGCGGCAACGGAUAAAUCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 33677 | 0.75 | 0.595324 |
Target: 5'- gCGAGGCGCCGagGCCggc---GGGCGc -3' miRNA: 3'- -GCUCCGCGGCaaCGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 74643 | 0.72 | 0.760504 |
Target: 5'- gCGGGGCGCCGcUGCCcg---GGGAg- -3' miRNA: 3'- -GCUCCGCGGCaACGGauaaaUCCUgc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 15493 | 0.71 | 0.77791 |
Target: 5'- aCGAcGGCGCCGccGCCggcgucaucUAGGACGu -3' miRNA: 3'- -GCU-CCGCGGCaaCGGauaa-----AUCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 117922 | 0.71 | 0.816693 |
Target: 5'- uCGAgGGCGCCGaagGCgCUGacgAGGACGa -3' miRNA: 3'- -GCU-CCGCGGCaa-CG-GAUaaaUCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 25032 | 0.7 | 0.858752 |
Target: 5'- uGAGGCGCCGUcGCCac----GGGCc -3' miRNA: 3'- gCUCCGCGGCAaCGGauaaauCCUGc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 89174 | 0.69 | 0.874115 |
Target: 5'- uGuGGCGCCGaggcGUCUAUUacgUAGGGCa -3' miRNA: 3'- gCuCCGCGGCaa--CGGAUAA---AUCCUGc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 63392 | 0.68 | 0.913365 |
Target: 5'- gGAGGCGCCGcUGCUggcgau-GACGa -3' miRNA: 3'- gCUCCGCGGCaACGGauaaaucCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 99013 | 0.68 | 0.930404 |
Target: 5'- cCGAGGUGCgCGcgGCCUGcgaggcgcuGGACGc -3' miRNA: 3'- -GCUCCGCG-GCaaCGGAUaaau-----CCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 48345 | 0.68 | 0.931459 |
Target: 5'- -cGGGCGCCGgugaaccagGCCgcgGUgguGGACGa -3' miRNA: 3'- gcUCCGCGGCaa-------CGGa--UAaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 119032 | 0.67 | 0.941458 |
Target: 5'- --cGGCGCCGgcGCCgcc--AGGACc -3' miRNA: 3'- gcuCCGCGGCaaCGGauaaaUCCUGc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 105266 | 0.67 | 0.946083 |
Target: 5'- uGGGGcCGCCGUgGCUgacccuGGGCGg -3' miRNA: 3'- gCUCC-GCGGCAaCGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 69836 | 0.67 | 0.95046 |
Target: 5'- aGAGGCGCagaucagcGCCUuggcgUGGGGCGc -3' miRNA: 3'- gCUCCGCGgcaa----CGGAuaa--AUCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 65873 | 0.67 | 0.95046 |
Target: 5'- aCGGGGUGCUGgccgcggucGCCgugaccgAGGACGg -3' miRNA: 3'- -GCUCCGCGGCaa-------CGGauaaa--UCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 90558 | 0.67 | 0.95046 |
Target: 5'- --uGGCGCCGgcUGCCguacacGGACGa -3' miRNA: 3'- gcuCCGCGGCa-ACGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 102679 | 0.67 | 0.954594 |
Target: 5'- uCGAGGCGCUG--GCCau----GGACGa -3' miRNA: 3'- -GCUCCGCGGCaaCGGauaaauCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 21572 | 0.67 | 0.958109 |
Target: 5'- aGAGGaucgucuUGCCGgUGCCUGUgcggUAGGcCGc -3' miRNA: 3'- gCUCC-------GCGGCaACGGAUAa---AUCCuGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 97734 | 0.67 | 0.958487 |
Target: 5'- --cGGCGCCGcccaGCCgccg-GGGACGc -3' miRNA: 3'- gcuCCGCGGCaa--CGGauaaaUCCUGC- -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 37120 | 0.66 | 0.966558 |
Target: 5'- cCGAGGCGCCGUcGUaggagacgacgaAGGGCa -3' miRNA: 3'- -GCUCCGCGGCAaCGgauaaa------UCCUGc -5' |
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25617 | 5' | -52.8 | NC_005337.1 | + | 133073 | 0.66 | 0.968778 |
Target: 5'- aCGcGGCGCCGgugGCCgccu--GGAUGc -3' miRNA: 3'- -GCuCCGCGGCaa-CGGauaaauCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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