miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25621 3' -64.8 NC_005337.1 + 855 0.66 0.511312
Target:  5'- gGCGGCGggcagcgcgGgCGCGGCCgggcggaagAGCGCgCCGa -3'
miRNA:   3'- gUGCCGC---------UgGCGCCGG---------UCGUGgGGCa -5'
25621 3' -64.8 NC_005337.1 + 80632 0.66 0.511312
Target:  5'- uCGCGGCGAUCaCGGC--GCACUCCu- -3'
miRNA:   3'- -GUGCCGCUGGcGCCGguCGUGGGGca -5'
25621 3' -64.8 NC_005337.1 + 87910 0.66 0.511312
Target:  5'- gCGCuGGCGcGCCuGC-GCCGGCGCUUCGUg -3'
miRNA:   3'- -GUG-CCGC-UGG-CGcCGGUCGUGGGGCA- -5'
25621 3' -64.8 NC_005337.1 + 25296 0.66 0.511312
Target:  5'- gCACGGCGGgCG-GGCC-GCGCgUCGa -3'
miRNA:   3'- -GUGCCGCUgGCgCCGGuCGUGgGGCa -5'
25621 3' -64.8 NC_005337.1 + 25433 0.66 0.511312
Target:  5'- gACGGCGugucgcCCGCGcGCUucGGCACCgUGg -3'
miRNA:   3'- gUGCCGCu-----GGCGC-CGG--UCGUGGgGCa -5'
25621 3' -64.8 NC_005337.1 + 83885 0.66 0.511312
Target:  5'- gCGCGGCGcgcccCCGC-GCCAgGCGCCCg-- -3'
miRNA:   3'- -GUGCCGCu----GGCGcCGGU-CGUGGGgca -5'
25621 3' -64.8 NC_005337.1 + 82959 0.66 0.511312
Target:  5'- aGCGGCgugGACUGguaguCGGCCAGCuCCuuGUc -3'
miRNA:   3'- gUGCCG---CUGGC-----GCCGGUCGuGGggCA- -5'
25621 3' -64.8 NC_005337.1 + 46459 0.66 0.511312
Target:  5'- uGCGcGCGGCgCGcCGGCgAGC-UCCCGg -3'
miRNA:   3'- gUGC-CGCUG-GC-GCCGgUCGuGGGGCa -5'
25621 3' -64.8 NC_005337.1 + 855 0.66 0.511312
Target:  5'- gGCGGCGggcagcgcgGgCGCGGCCgggcggaagAGCGCgCCGa -3'
miRNA:   3'- gUGCCGC---------UgGCGCCGG---------UCGUGgGGCa -5'
25621 3' -64.8 NC_005337.1 + 91399 0.66 0.511312
Target:  5'- gGCGGCGccCCGCu-CCAGCACCuUCGUc -3'
miRNA:   3'- gUGCCGCu-GGCGccGGUCGUGG-GGCA- -5'
25621 3' -64.8 NC_005337.1 + 127357 0.66 0.511312
Target:  5'- -gUGGCGaugauGCUGCGcGCCGGCGCggaCCCGc -3'
miRNA:   3'- guGCCGC-----UGGCGC-CGGUCGUG---GGGCa -5'
25621 3' -64.8 NC_005337.1 + 59400 0.66 0.511312
Target:  5'- aCACGaUGGCCGUGaCCAGCAUgCCCGc -3'
miRNA:   3'- -GUGCcGCUGGCGCcGGUCGUG-GGGCa -5'
25621 3' -64.8 NC_005337.1 + 42397 0.66 0.502096
Target:  5'- gCGCcGCGGCgCGCGGCCucgcuGUGCgCCGg -3'
miRNA:   3'- -GUGcCGCUG-GCGCCGGu----CGUGgGGCa -5'
25621 3' -64.8 NC_005337.1 + 123935 0.66 0.502096
Target:  5'- gGCGGCGACgGCcGCguGCAgCUCCa- -3'
miRNA:   3'- gUGCCGCUGgCGcCGguCGU-GGGGca -5'
25621 3' -64.8 NC_005337.1 + 86226 0.66 0.502096
Target:  5'- gCACGGCGucuauCCGCGcGUCGuuCGCCgCCGUg -3'
miRNA:   3'- -GUGCCGCu----GGCGC-CGGUc-GUGG-GGCA- -5'
25621 3' -64.8 NC_005337.1 + 39647 0.66 0.502096
Target:  5'- aCGCaGCGG-CGCGGCCGcGUggggcgcgugGCCCCGg -3'
miRNA:   3'- -GUGcCGCUgGCGCCGGU-CG----------UGGGGCa -5'
25621 3' -64.8 NC_005337.1 + 28497 0.66 0.502096
Target:  5'- gCGCGGCG--CGCGGUCgcgcGGCACUgCGUg -3'
miRNA:   3'- -GUGCCGCugGCGCCGG----UCGUGGgGCA- -5'
25621 3' -64.8 NC_005337.1 + 131872 0.66 0.499344
Target:  5'- cCACGuGCGACCGCuuccGCCuGCGCgugucgucgacgcaCCCGa -3'
miRNA:   3'- -GUGC-CGCUGGCGc---CGGuCGUG--------------GGGCa -5'
25621 3' -64.8 NC_005337.1 + 20665 0.66 0.492952
Target:  5'- gCACGGCgcgGACCagaGgGGCgGGCACCCg-- -3'
miRNA:   3'- -GUGCCG---CUGG---CgCCGgUCGUGGGgca -5'
25621 3' -64.8 NC_005337.1 + 108640 0.66 0.492952
Target:  5'- gAC-GCGGCCGUGGCgGGCgACCgCGc -3'
miRNA:   3'- gUGcCGCUGGCGCCGgUCG-UGGgGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.