miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25621 5' -57.5 NC_005337.1 + 58548 0.66 0.846666
Target:  5'- cCGgGGaAGUGCcuGGUCUUCGAGC-CCu -3'
miRNA:   3'- uGUgCC-UCAUGu-CCGGGAGCUCGaGG- -5'
25621 5' -57.5 NC_005337.1 + 11390 0.66 0.846666
Target:  5'- -gGCGGGcugaUGCgccaGGGCCC-CGGGUUCCg -3'
miRNA:   3'- ugUGCCUc---AUG----UCCGGGaGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 109520 0.66 0.846666
Target:  5'- -aACGGuGc-CAGGUCCUCGuGCUgCa -3'
miRNA:   3'- ugUGCCuCauGUCCGGGAGCuCGAgG- -5'
25621 5' -57.5 NC_005337.1 + 31087 0.66 0.838606
Target:  5'- uCGCGGGGUucaGCgAGGCCa-CGAGCgcguucUCCa -3'
miRNA:   3'- uGUGCCUCA---UG-UCCGGgaGCUCG------AGG- -5'
25621 5' -57.5 NC_005337.1 + 8350 0.66 0.838606
Target:  5'- -aGCGGGGcaaucUGCgAGGCgCggcaCGAGCUCCc -3'
miRNA:   3'- ugUGCCUC-----AUG-UCCGgGa---GCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 12606 0.66 0.838606
Target:  5'- cGCGCGGAuGaGCAGGUCCaCGAcCUCg -3'
miRNA:   3'- -UGUGCCU-CaUGUCCGGGaGCUcGAGg -5'
25621 5' -57.5 NC_005337.1 + 11739 0.66 0.838606
Target:  5'- aGC-CGcGAGaAgGGGaCCUUGGGCUCCa -3'
miRNA:   3'- -UGuGC-CUCaUgUCCgGGAGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 68193 0.66 0.835329
Target:  5'- aGCGCGGccccGGgggcgccgcUGCGGGCCCgccugacggcgucCGGGUUCCg -3'
miRNA:   3'- -UGUGCC----UC---------AUGUCCGGGa------------GCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 90839 0.66 0.830359
Target:  5'- cCGCGGGGUGCc-GCUCgccguccgCGGGCUCg -3'
miRNA:   3'- uGUGCCUCAUGucCGGGa-------GCUCGAGg -5'
25621 5' -57.5 NC_005337.1 + 45809 0.66 0.830359
Target:  5'- aGCGCGGAGUucu-GCuCCUCGAcggcguGUUCCg -3'
miRNA:   3'- -UGUGCCUCAugucCG-GGAGCU------CGAGG- -5'
25621 5' -57.5 NC_005337.1 + 63888 0.66 0.830359
Target:  5'- cCGCGGuGaAUAGccgguuGCCCUCGAGCUg- -3'
miRNA:   3'- uGUGCCuCaUGUC------CGGGAGCUCGAgg -5'
25621 5' -57.5 NC_005337.1 + 815 0.66 0.828688
Target:  5'- cCGCGGAGccguccgcgcgcGCGGGCCC--GGGCUCg -3'
miRNA:   3'- uGUGCCUCa-----------UGUCCGGGagCUCGAGg -5'
25621 5' -57.5 NC_005337.1 + 815 0.66 0.828688
Target:  5'- cCGCGGAGccguccgcgcgcGCGGGCCC--GGGCUCg -3'
miRNA:   3'- uGUGCCUCa-----------UGUCCGGGagCUCGAGg -5'
25621 5' -57.5 NC_005337.1 + 122391 0.66 0.821934
Target:  5'- aACGCGGggcaguGGUACguGGGCagcgCCUCGcucacgggcGGCUCCa -3'
miRNA:   3'- -UGUGCC------UCAUG--UCCG----GGAGC---------UCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 33949 0.66 0.821934
Target:  5'- -gACGGAGUcCAGGaUCC-CGaAGCUCUc -3'
miRNA:   3'- ugUGCCUCAuGUCC-GGGaGC-UCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 91133 0.66 0.813338
Target:  5'- aGCAUGGAGaGCAGGCUaguguaGuAGCUCa -3'
miRNA:   3'- -UGUGCCUCaUGUCCGGgag---C-UCGAGg -5'
25621 5' -57.5 NC_005337.1 + 103874 0.66 0.813338
Target:  5'- uCGCGGAGcGCGGcGgCCUCGAcaUCCu -3'
miRNA:   3'- uGUGCCUCaUGUC-CgGGAGCUcgAGG- -5'
25621 5' -57.5 NC_005337.1 + 1282 0.66 0.813338
Target:  5'- cCGCGGAG-GCGGGUCggCGGGCagguugUCCa -3'
miRNA:   3'- uGUGCCUCaUGUCCGGgaGCUCG------AGG- -5'
25621 5' -57.5 NC_005337.1 + 16838 0.66 0.804579
Target:  5'- -gGCGGGuGUACuucGUCCaCGGGCUCCa -3'
miRNA:   3'- ugUGCCU-CAUGuc-CGGGaGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 60883 0.66 0.804579
Target:  5'- -uGCGG-GUGCGGGCgcgccgaguacgCCUCcgaGAGUUCCu -3'
miRNA:   3'- ugUGCCuCAUGUCCG------------GGAG---CUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.