miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25621 5' -57.5 NC_005337.1 + 815 0.66 0.828688
Target:  5'- cCGCGGAGccguccgcgcgcGCGGGCCC--GGGCUCg -3'
miRNA:   3'- uGUGCCUCa-----------UGUCCGGGagCUCGAGg -5'
25621 5' -57.5 NC_005337.1 + 815 0.66 0.828688
Target:  5'- cCGCGGAGccguccgcgcgcGCGGGCCC--GGGCUCg -3'
miRNA:   3'- uGUGCCUCa-----------UGUCCGGGagCUCGAGg -5'
25621 5' -57.5 NC_005337.1 + 996 0.69 0.659556
Target:  5'- cGCGCGGAGgGCGGGCgucgCCUgGAGg-CCg -3'
miRNA:   3'- -UGUGCCUCaUGUCCG----GGAgCUCgaGG- -5'
25621 5' -57.5 NC_005337.1 + 996 0.69 0.659556
Target:  5'- cGCGCGGAGgGCGGGCgucgCCUgGAGg-CCg -3'
miRNA:   3'- -UGUGCCUCaUGUCCG----GGAgCUCgaGG- -5'
25621 5' -57.5 NC_005337.1 + 1282 0.66 0.813338
Target:  5'- cCGCGGAG-GCGGGUCggCGGGCagguugUCCa -3'
miRNA:   3'- uGUGCCUCaUGUCCGGgaGCUCG------AGG- -5'
25621 5' -57.5 NC_005337.1 + 3083 0.69 0.659556
Target:  5'- cCACGGAGgggcGCuGGCCCUC---CUCCg -3'
miRNA:   3'- uGUGCCUCa---UGuCCGGGAGcucGAGG- -5'
25621 5' -57.5 NC_005337.1 + 3410 0.68 0.745222
Target:  5'- cCGCuGGAGUugAGGgCCgucgggucgcagcCGAGCUCUa -3'
miRNA:   3'- uGUG-CCUCAugUCCgGGa------------GCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 3571 0.76 0.292536
Target:  5'- gACACGGAGUcCGGGCCCgucagcgcggaCGAGCggcagUCCg -3'
miRNA:   3'- -UGUGCCUCAuGUCCGGGa----------GCUCG-----AGG- -5'
25621 5' -57.5 NC_005337.1 + 5052 0.68 0.739414
Target:  5'- -aGCGGGGUcgcgccacaGCAGcGCUCUgGGGCgUCCa -3'
miRNA:   3'- ugUGCCUCA---------UGUC-CGGGAgCUCG-AGG- -5'
25621 5' -57.5 NC_005337.1 + 8350 0.66 0.838606
Target:  5'- -aGCGGGGcaaucUGCgAGGCgCggcaCGAGCUCCc -3'
miRNA:   3'- ugUGCCUC-----AUG-UCCGgGa---GCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 8852 0.72 0.499285
Target:  5'- aGCACGGGGcgACuGGCCC-CGGGCa-- -3'
miRNA:   3'- -UGUGCCUCa-UGuCCGGGaGCUCGagg -5'
25621 5' -57.5 NC_005337.1 + 10610 0.67 0.786604
Target:  5'- cAUGCGGAggugGUACAGGCCCgcgucaGAGagCCa -3'
miRNA:   3'- -UGUGCCU----CAUGUCCGGGag----CUCgaGG- -5'
25621 5' -57.5 NC_005337.1 + 10741 0.68 0.739414
Target:  5'- -gGCGGugggacGUGCAcucgaCCUCGAGCUCCg -3'
miRNA:   3'- ugUGCCu-----CAUGUccg--GGAGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 10917 0.72 0.470889
Target:  5'- -gGCGGGG-GCAGGUCCUCGaAGUgCCg -3'
miRNA:   3'- ugUGCCUCaUGUCCGGGAGC-UCGaGG- -5'
25621 5' -57.5 NC_005337.1 + 11390 0.66 0.846666
Target:  5'- -gGCGGGcugaUGCgccaGGGCCC-CGGGUUCCg -3'
miRNA:   3'- ugUGCCUc---AUG----UCCGGGaGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 11739 0.66 0.838606
Target:  5'- aGC-CGcGAGaAgGGGaCCUUGGGCUCCa -3'
miRNA:   3'- -UGuGC-CUCaUgUCCgGGAGCUCGAGG- -5'
25621 5' -57.5 NC_005337.1 + 12606 0.66 0.838606
Target:  5'- cGCGCGGAuGaGCAGGUCCaCGAcCUCg -3'
miRNA:   3'- -UGUGCCU-CaUGUCCGGGaGCUcGAGg -5'
25621 5' -57.5 NC_005337.1 + 14221 0.67 0.758632
Target:  5'- -gGCGGAGUACaAGGCCUUucCGgacAGCUUg -3'
miRNA:   3'- ugUGCCUCAUG-UCCGGGA--GC---UCGAGg -5'
25621 5' -57.5 NC_005337.1 + 14287 0.68 0.719825
Target:  5'- -gGCGGAGUggaaguggauguACAGGCUcagcgcgcgCUCGAgGUUCCg -3'
miRNA:   3'- ugUGCCUCA------------UGUCCGG---------GAGCU-CGAGG- -5'
25621 5' -57.5 NC_005337.1 + 16019 0.73 0.434356
Target:  5'- cGC-CGGAGUgaugauGCGcGGCgucuCCUCGGGCUCCg -3'
miRNA:   3'- -UGuGCCUCA------UGU-CCG----GGAGCUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.