miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25635 5' -62.2 NC_005337.1 + 99426 0.66 0.608797
Target:  5'- --aUGGCGCGCCGCc-GCAuauaUGCCCcaUCa -3'
miRNA:   3'- gagGCCGCGUGGCGcuCGU----ACGGG--AG- -5'
25635 5' -62.2 NC_005337.1 + 105433 0.66 0.608797
Target:  5'- --aCGGCGUACUGCc-GCAUGgUCUCg -3'
miRNA:   3'- gagGCCGCGUGGCGcuCGUACgGGAG- -5'
25635 5' -62.2 NC_005337.1 + 80595 0.66 0.608797
Target:  5'- -cCCGGCGCuucaaggguCCaGCGAGCAcGCCg-- -3'
miRNA:   3'- gaGGCCGCGu--------GG-CGCUCGUaCGGgag -5'
25635 5' -62.2 NC_005337.1 + 14658 0.66 0.608797
Target:  5'- cCUCCGGCaucaGCGCgGCGAGaCAggaguugcaGCgCUCg -3'
miRNA:   3'- -GAGGCCG----CGUGgCGCUC-GUa--------CGgGAG- -5'
25635 5' -62.2 NC_005337.1 + 1330 0.66 0.608797
Target:  5'- gUCCaGCGCGCUGCaGAGCGggucGCCg-- -3'
miRNA:   3'- gAGGcCGCGUGGCG-CUCGUa---CGGgag -5'
25635 5' -62.2 NC_005337.1 + 68293 0.66 0.608797
Target:  5'- -gCCGGCcgGCGgCGUGGacgcGCGUGCCCg- -3'
miRNA:   3'- gaGGCCG--CGUgGCGCU----CGUACGGGag -5'
25635 5' -62.2 NC_005337.1 + 95770 0.66 0.608797
Target:  5'- -aCCaGGCGCGCC-CGGGCGgccaCCUCc -3'
miRNA:   3'- gaGG-CCGCGUGGcGCUCGUacg-GGAG- -5'
25635 5' -62.2 NC_005337.1 + 128210 0.66 0.608797
Target:  5'- aUCCuGGCGCcgcucgugGCCGCGGGCGcggacauccacGCCCg- -3'
miRNA:   3'- gAGG-CCGCG--------UGGCGCUCGUa----------CGGGag -5'
25635 5' -62.2 NC_005337.1 + 79069 0.66 0.608797
Target:  5'- uUgCGGCGCGCCaccacgaagcuGCGcAGCAuguUGCUCUUg -3'
miRNA:   3'- gAgGCCGCGUGG-----------CGC-UCGU---ACGGGAG- -5'
25635 5' -62.2 NC_005337.1 + 93000 0.66 0.608797
Target:  5'- --aUGGCGCugCGCGAGaCGUaccaCCUCu -3'
miRNA:   3'- gagGCCGCGugGCGCUC-GUAcg--GGAG- -5'
25635 5' -62.2 NC_005337.1 + 55889 0.66 0.605813
Target:  5'- gUgCGGCGCAgcauCCGCGAGgGccucagcgucacgcUGCCCa- -3'
miRNA:   3'- gAgGCCGCGU----GGCGCUCgU--------------ACGGGag -5'
25635 5' -62.2 NC_005337.1 + 118377 0.66 0.598858
Target:  5'- cCUCCGGCGCcCUGCugGGGCAgcggaaCCCg- -3'
miRNA:   3'- -GAGGCCGCGuGGCG--CUCGUac----GGGag -5'
25635 5' -62.2 NC_005337.1 + 11241 0.66 0.598858
Target:  5'- cCUCgGuGCGCAgcccuucgacguCCGCGGGgAUgugucgGCCCUCg -3'
miRNA:   3'- -GAGgC-CGCGU------------GGCGCUCgUA------CGGGAG- -5'
25635 5' -62.2 NC_005337.1 + 25751 0.66 0.598858
Target:  5'- -aCCGuCGCGCCGUccAGCGUGCgCUCc -3'
miRNA:   3'- gaGGCcGCGUGGCGc-UCGUACGgGAG- -5'
25635 5' -62.2 NC_005337.1 + 68762 0.66 0.598858
Target:  5'- -aCCGGcCGCACCGCaucGAGUAccaCCCUg -3'
miRNA:   3'- gaGGCC-GCGUGGCG---CUCGUac-GGGAg -5'
25635 5' -62.2 NC_005337.1 + 77179 0.66 0.598858
Target:  5'- -gCCGGCGCcacCCGCGgauggcgaacAGCggGCgCUCg -3'
miRNA:   3'- gaGGCCGCGu--GGCGC----------UCGuaCGgGAG- -5'
25635 5' -62.2 NC_005337.1 + 94828 0.66 0.598858
Target:  5'- aCUCCaucguGCGCACCGagcgcggccCGAGCGggcGCCCg- -3'
miRNA:   3'- -GAGGc----CGCGUGGC---------GCUCGUa--CGGGag -5'
25635 5' -62.2 NC_005337.1 + 112767 0.66 0.598858
Target:  5'- gUCCGGCcugcgGCuCCGCGAGCucaGCCa-- -3'
miRNA:   3'- gAGGCCG-----CGuGGCGCUCGua-CGGgag -5'
25635 5' -62.2 NC_005337.1 + 126422 0.66 0.598858
Target:  5'- -cCCGGCGCGCgacgGCGcGCGUGCgCg- -3'
miRNA:   3'- gaGGCCGCGUGg---CGCuCGUACGgGag -5'
25635 5' -62.2 NC_005337.1 + 94250 0.66 0.598858
Target:  5'- gUCUGGUucagGCGCuCGUaGGGCAUGCUCUUu -3'
miRNA:   3'- gAGGCCG----CGUG-GCG-CUCGUACGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.