miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 3' -51.3 NC_005337.1 + 5601 0.66 0.992441
Target:  5'- -uGCCcGGCGGGGGACgAGCgUCU-CGg -3'
miRNA:   3'- ggUGGaCUGCCUCUUG-UUGgAGAuGC- -5'
25637 3' -51.3 NC_005337.1 + 49801 0.66 0.992441
Target:  5'- gUCACgucgCUGACGGAGGugccggccGCGcCCUCcGCGg -3'
miRNA:   3'- -GGUG----GACUGCCUCU--------UGUuGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 91695 0.66 0.992441
Target:  5'- aCGCCUucACGGAGAgccccGCGGCCUCc--- -3'
miRNA:   3'- gGUGGAc-UGCCUCU-----UGUUGGAGaugc -5'
25637 3' -51.3 NC_005337.1 + 28053 0.66 0.991325
Target:  5'- aCCGCCgccAUGGAGAaaaacaACGugCUCUccaGCGa -3'
miRNA:   3'- -GGUGGac-UGCCUCU------UGUugGAGA---UGC- -5'
25637 3' -51.3 NC_005337.1 + 16182 0.66 0.991325
Target:  5'- uCCACCacgcGcCGGAGAGCcccgagGAgCUCUACa -3'
miRNA:   3'- -GGUGGa---CuGCCUCUUG------UUgGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 117296 0.66 0.991325
Target:  5'- cCCGCgUGcUGGAGGugGacGCCUCcGCGc -3'
miRNA:   3'- -GGUGgACuGCCUCUugU--UGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 127505 0.66 0.991325
Target:  5'- aCACC-GGCGG-GAAC-ACCgcgCUGCa -3'
miRNA:   3'- gGUGGaCUGCCuCUUGuUGGa--GAUGc -5'
25637 3' -51.3 NC_005337.1 + 110856 0.66 0.991325
Target:  5'- gCGCCcguUGACGGGGAuguGCUUgUACGu -3'
miRNA:   3'- gGUGG---ACUGCCUCUuguUGGAgAUGC- -5'
25637 3' -51.3 NC_005337.1 + 83202 0.66 0.990084
Target:  5'- aCCAUgagGAUGGGGAugGAgCCgCUGCGg -3'
miRNA:   3'- -GGUGga-CUGCCUCUugUU-GGaGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 2810 0.66 0.989685
Target:  5'- uCCGCgUGcgaGGAGAagcccaggccgagcGCGGCCUCcGCGg -3'
miRNA:   3'- -GGUGgACug-CCUCU--------------UGUUGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 123205 0.66 0.988707
Target:  5'- gCUGCCaGGCGGgccAGGGCuucguCCUCUGCa -3'
miRNA:   3'- -GGUGGaCUGCC---UCUUGuu---GGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 79156 0.66 0.988707
Target:  5'- aCGCCgGAC-GAGGGC-ACCUCcACGa -3'
miRNA:   3'- gGUGGaCUGcCUCUUGuUGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 86207 0.66 0.988707
Target:  5'- uCCGggcUCUGcACGGAGAGCAcgGCgUCUAUc -3'
miRNA:   3'- -GGU---GGAC-UGCCUCUUGU--UGgAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 101213 0.66 0.988707
Target:  5'- -uGCCUGAUGGcguccGGGuuCGACCUCUGgGc -3'
miRNA:   3'- ggUGGACUGCC-----UCUu-GUUGGAGAUgC- -5'
25637 3' -51.3 NC_005337.1 + 94155 0.66 0.988707
Target:  5'- gCGCCUccccacGACGGAGAACcgcuuGCCg--ACGa -3'
miRNA:   3'- gGUGGA------CUGCCUCUUGu----UGGagaUGC- -5'
25637 3' -51.3 NC_005337.1 + 58079 0.66 0.988707
Target:  5'- aCACCgUGGCGGAcAACAGCagCUGCc -3'
miRNA:   3'- gGUGG-ACUGCCUcUUGUUGgaGAUGc -5'
25637 3' -51.3 NC_005337.1 + 101209 0.66 0.988562
Target:  5'- aCCGCCUGcuucgcggaggucGCGGAGGcguccgcgcGCGugCUCgcgcuggACGg -3'
miRNA:   3'- -GGUGGAC-------------UGCCUCU---------UGUugGAGa------UGC- -5'
25637 3' -51.3 NC_005337.1 + 80044 0.66 0.987186
Target:  5'- gCGCCgGACgaGGAGAucuACGcCUUCUGCGa -3'
miRNA:   3'- gGUGGaCUG--CCUCU---UGUuGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 92437 0.66 0.987186
Target:  5'- cCCGCCcGACGaGGAGgAGCCggacacCUGCGu -3'
miRNA:   3'- -GGUGGaCUGCcUCUUgUUGGa-----GAUGC- -5'
25637 3' -51.3 NC_005337.1 + 14207 0.66 0.987186
Target:  5'- uCCGCCgagauagcGGCGGAGuACAagGCCUUUcCGg -3'
miRNA:   3'- -GGUGGa-------CUGCCUCuUGU--UGGAGAuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.