miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 3' -51.3 NC_005337.1 + 59749 0.69 0.941458
Target:  5'- gCCGCCcuccucgaUGAgGGAGGcguACAGCCUCUuCa -3'
miRNA:   3'- -GGUGG--------ACUgCCUCU---UGUUGGAGAuGc -5'
25637 3' -51.3 NC_005337.1 + 51560 0.69 0.946083
Target:  5'- gCCGCguucgUGACGGGaGACAGCCUCU-CGc -3'
miRNA:   3'- -GGUGg----ACUGCCUcUUGUUGGAGAuGC- -5'
25637 3' -51.3 NC_005337.1 + 15841 0.69 0.95046
Target:  5'- uCCuCCUGGCGGAuGGugucgccCAugCUCUGCa -3'
miRNA:   3'- -GGuGGACUGCCU-CUu------GUugGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 66182 0.69 0.952142
Target:  5'- aCCACCgccgcguccggggcGACGGGGAGCucgugcguuCCUCcGCGg -3'
miRNA:   3'- -GGUGGa-------------CUGCCUCUUGuu-------GGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 124040 0.69 0.952969
Target:  5'- gCCACCUGcaaGGAGcacaugaccguguACGGCUUCUACa -3'
miRNA:   3'- -GGUGGACug-CCUCu------------UGUUGGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 49329 0.69 0.958109
Target:  5'- uCCAgCgacacGCGGAGGGCAACUcgaugcuUCUGCGg -3'
miRNA:   3'- -GGUgGac---UGCCUCUUGUUGG-------AGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 66085 0.68 0.962146
Target:  5'- gCCGCggcGGCGGAGGcgcuguGCGGCgUCUGCGc -3'
miRNA:   3'- -GGUGga-CUGCCUCU------UGUUGgAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 88154 0.68 0.962146
Target:  5'- gCCGCCcGACc-AGGACGACCagCUGCGg -3'
miRNA:   3'- -GGUGGaCUGccUCUUGUUGGa-GAUGC- -5'
25637 3' -51.3 NC_005337.1 + 44441 0.68 0.962146
Target:  5'- gCCGCCgc-CGGAGGACGucgagcGCCUCgcCGa -3'
miRNA:   3'- -GGUGGacuGCCUCUUGU------UGGAGauGC- -5'
25637 3' -51.3 NC_005337.1 + 52904 0.68 0.965574
Target:  5'- cCCGacuCCUG--GGAGAAgGACUUCUACGu -3'
miRNA:   3'- -GGU---GGACugCCUCUUgUUGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 70764 0.68 0.968467
Target:  5'- -gGCCUGcacgucggugagcACGGAGGACAgcGCCUUcACGc -3'
miRNA:   3'- ggUGGAC-------------UGCCUCUUGU--UGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 105917 0.68 0.968778
Target:  5'- aC-CCUGGCGGAcAACGAgUUCUACc -3'
miRNA:   3'- gGuGGACUGCCUcUUGUUgGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 76814 0.68 0.968778
Target:  5'- aCGcCCUGcaucuCGGAGGGCAugCUC-GCGg -3'
miRNA:   3'- gGU-GGACu----GCCUCUUGUugGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 58974 0.68 0.968778
Target:  5'- cCCGcuCCUGGCGGAGcuCggUCgCUACGc -3'
miRNA:   3'- -GGU--GGACUGCCUCuuGuuGGaGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 53568 0.68 0.968778
Target:  5'- aCCAgCUcacGugGGAGAACuuCCUC-GCGc -3'
miRNA:   3'- -GGUgGA---CugCCUCUUGuuGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 19596 0.68 0.971763
Target:  5'- uCCACUgcguccaGCGGAGAgGCGGCCUCgagGCc -3'
miRNA:   3'- -GGUGGac-----UGCCUCU-UGUUGGAGa--UGc -5'
25637 3' -51.3 NC_005337.1 + 120731 0.68 0.971763
Target:  5'- uCgACCUGuCGGAGAACG---UCUGCa -3'
miRNA:   3'- -GgUGGACuGCCUCUUGUuggAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 44033 0.68 0.974538
Target:  5'- gUACCUGcccACGGAcGAGaCAgaguACCUCUGCa -3'
miRNA:   3'- gGUGGAC---UGCCU-CUU-GU----UGGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 103534 0.68 0.974538
Target:  5'- gCCGCCcGA-GGAGcgcgcgcuguACGACUUCUGCGa -3'
miRNA:   3'- -GGUGGaCUgCCUCu---------UGUUGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 70968 0.67 0.977108
Target:  5'- gCCugCUGcacuCGGugcuGAGCGGgCUCUACa -3'
miRNA:   3'- -GGugGACu---GCCu---CUUGUUgGAGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.