miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 3' -51.3 NC_005337.1 + 80044 0.66 0.987186
Target:  5'- gCGCCgGACgaGGAGAucuACGcCUUCUGCGa -3'
miRNA:   3'- gGUGGaCUG--CCUCU---UGUuGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 59235 0.66 0.987186
Target:  5'- aCUuCCUGGCGGAGAucggggcCAGCC-CcACGg -3'
miRNA:   3'- -GGuGGACUGCCUCUu------GUUGGaGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 128462 0.66 0.987026
Target:  5'- aCCGCCgGACcggcgcgGGAGAccGCGugCUCgcggGCGu -3'
miRNA:   3'- -GGUGGaCUG-------CCUCU--UGUugGAGa---UGC- -5'
25637 3' -51.3 NC_005337.1 + 25775 0.67 0.985336
Target:  5'- cCCGCCUGGacagauUGGAGAGgcACCUggagagcCUGCGa -3'
miRNA:   3'- -GGUGGACU------GCCUCUUguUGGA-------GAUGC- -5'
25637 3' -51.3 NC_005337.1 + 120325 0.67 0.983676
Target:  5'- gUCGCC-GACGGGugcaugcuGGACGACCUC-AUGa -3'
miRNA:   3'- -GGUGGaCUGCCU--------CUUGUUGGAGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 120676 0.67 0.983676
Target:  5'- cCCGgCUGGCGGAGAugGcGCUcCUGgGg -3'
miRNA:   3'- -GGUgGACUGCCUCUugU-UGGaGAUgC- -5'
25637 3' -51.3 NC_005337.1 + 74561 0.67 0.983676
Target:  5'- gCAUgCUGACGGAGAuuucCAugCUCgaaaaGCGg -3'
miRNA:   3'- gGUG-GACUGCCUCUu---GUugGAGa----UGC- -5'
25637 3' -51.3 NC_005337.1 + 58481 0.67 0.981669
Target:  5'- gCugCUGACGGAGcuccGCGAgCgcagCUGCa -3'
miRNA:   3'- gGugGACUGCCUCu---UGUUgGa---GAUGc -5'
25637 3' -51.3 NC_005337.1 + 31383 0.67 0.981669
Target:  5'- cCCACgCUGcGCGGGauGGAgAugCUCUGCa -3'
miRNA:   3'- -GGUG-GAC-UGCCU--CUUgUugGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 105066 0.67 0.981669
Target:  5'- cCCgACgaGACGcuguucucgucuGAGGACugAACCUCUGCGg -3'
miRNA:   3'- -GG-UGgaCUGC------------CUCUUG--UUGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 18006 0.67 0.981669
Target:  5'- aUCACC-GGCGGAGccauGGCAG-CUCUGCu -3'
miRNA:   3'- -GGUGGaCUGCCUC----UUGUUgGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 50388 0.67 0.981669
Target:  5'- gCGCCUGGCGcGGGGGCGcGCCgc-GCGu -3'
miRNA:   3'- gGUGGACUGC-CUCUUGU-UGGagaUGC- -5'
25637 3' -51.3 NC_005337.1 + 22559 0.67 0.981459
Target:  5'- uUCACCgcgGACGcGcgguucaGGGACGACCUCUucCGg -3'
miRNA:   3'- -GGUGGa--CUGC-C-------UCUUGUUGGAGAu-GC- -5'
25637 3' -51.3 NC_005337.1 + 13863 0.67 0.979483
Target:  5'- uCCGCCUccggGACGGucguGGGCAGCgUgUACa -3'
miRNA:   3'- -GGUGGA----CUGCCu---CUUGUUGgAgAUGc -5'
25637 3' -51.3 NC_005337.1 + 70968 0.67 0.977108
Target:  5'- gCCugCUGcacuCGGugcuGAGCGGgCUCUACa -3'
miRNA:   3'- -GGugGACu---GCCu---CUUGUUgGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 130091 0.67 0.977108
Target:  5'- aCCACCcggUGAUGGAGGAC-GCCgUC-AUGg -3'
miRNA:   3'- -GGUGG---ACUGCCUCUUGuUGG-AGaUGC- -5'
25637 3' -51.3 NC_005337.1 + 93468 0.67 0.977108
Target:  5'- cCCGCC-GGCGG-GAACGugguggugcGCCUCggagACGc -3'
miRNA:   3'- -GGUGGaCUGCCuCUUGU---------UGGAGa---UGC- -5'
25637 3' -51.3 NC_005337.1 + 44033 0.68 0.974538
Target:  5'- gUACCUGcccACGGAcGAGaCAgaguACCUCUGCa -3'
miRNA:   3'- gGUGGAC---UGCCU-CUU-GU----UGGAGAUGc -5'
25637 3' -51.3 NC_005337.1 + 103534 0.68 0.974538
Target:  5'- gCCGCCcGA-GGAGcgcgcgcuguACGACUUCUGCGa -3'
miRNA:   3'- -GGUGGaCUgCCUCu---------UGUUGGAGAUGC- -5'
25637 3' -51.3 NC_005337.1 + 19596 0.68 0.971763
Target:  5'- uCCACUgcguccaGCGGAGAgGCGGCCUCgagGCc -3'
miRNA:   3'- -GGUGGac-----UGCCUCU-UGUUGGAGa--UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.