Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25637 | 3' | -51.3 | NC_005337.1 | + | 58974 | 0.68 | 0.968778 |
Target: 5'- cCCGcuCCUGGCGGAGcuCggUCgCUACGc -3' miRNA: 3'- -GGU--GGACUGCCUCuuGuuGGaGAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 59749 | 0.69 | 0.941458 |
Target: 5'- gCCGCCcuccucgaUGAgGGAGGcguACAGCCUCUuCa -3' miRNA: 3'- -GGUGG--------ACUgCCUCU---UGUUGGAGAuGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 15841 | 0.69 | 0.95046 |
Target: 5'- uCCuCCUGGCGGAuGGugucgccCAugCUCUGCa -3' miRNA: 3'- -GGuGGACUGCCU-CUu------GUugGAGAUGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 49329 | 0.69 | 0.958109 |
Target: 5'- uCCAgCgacacGCGGAGGGCAACUcgaugcuUCUGCGg -3' miRNA: 3'- -GGUgGac---UGCCUCUUGUUGG-------AGAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 44441 | 0.68 | 0.962146 |
Target: 5'- gCCGCCgc-CGGAGGACGucgagcGCCUCgcCGa -3' miRNA: 3'- -GGUGGacuGCCUCUUGU------UGGAGauGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 66085 | 0.68 | 0.962146 |
Target: 5'- gCCGCggcGGCGGAGGcgcuguGCGGCgUCUGCGc -3' miRNA: 3'- -GGUGga-CUGCCUCU------UGUUGgAGAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 88154 | 0.68 | 0.962146 |
Target: 5'- gCCGCCcGACc-AGGACGACCagCUGCGg -3' miRNA: 3'- -GGUGGaCUGccUCUUGUUGGa-GAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 52904 | 0.68 | 0.965574 |
Target: 5'- cCCGacuCCUG--GGAGAAgGACUUCUACGu -3' miRNA: 3'- -GGU---GGACugCCUCUUgUUGGAGAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 76814 | 0.68 | 0.968778 |
Target: 5'- aCGcCCUGcaucuCGGAGGGCAugCUC-GCGg -3' miRNA: 3'- gGU-GGACu----GCCUCUUGUugGAGaUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 64147 | 0.7 | 0.931459 |
Target: 5'- aCCugucCCUGACGGAGGGCGGCgaggagaUGCGc -3' miRNA: 3'- -GGu---GGACUGCCUCUUGUUGgag----AUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 13543 | 0.7 | 0.926082 |
Target: 5'- aCCGCUUGACGGAGucAACGGuucuucUCUUUGCa -3' miRNA: 3'- -GGUGGACUGCCUC--UUGUU------GGAGAUGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 72582 | 0.7 | 0.914571 |
Target: 5'- aCUACCUGACcGuGcGCcGCCUCUGCa -3' miRNA: 3'- -GGUGGACUGcCuCuUGuUGGAGAUGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 24181 | 0.74 | 0.770226 |
Target: 5'- aCCGCCUucuACGGAGAACGcacuGCCUCacagACGc -3' miRNA: 3'- -GGUGGAc--UGCCUCUUGU----UGGAGa---UGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 10284 | 0.73 | 0.798573 |
Target: 5'- aCCAuCCUGGCGGAGG--GGCCUCggaACa -3' miRNA: 3'- -GGU-GGACUGCCUCUugUUGGAGa--UGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 63001 | 0.73 | 0.825492 |
Target: 5'- gCGCCUgaaGACGGAGGcCAugCUgUGCGa -3' miRNA: 3'- gGUGGA---CUGCCUCUuGUugGAgAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 84001 | 0.72 | 0.842525 |
Target: 5'- -gGCCUGcACGGGGcACAcuggcGCUUCUGCGg -3' miRNA: 3'- ggUGGAC-UGCCUCuUGU-----UGGAGAUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 38718 | 0.72 | 0.856372 |
Target: 5'- gUCGuCCUGACGGGGGACAccggcgucggcaagACCUC-GCa -3' miRNA: 3'- -GGU-GGACUGCCUCUUGU--------------UGGAGaUGc -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 68221 | 0.71 | 0.888563 |
Target: 5'- cCCGCCUGACGGcguccggguuccGGAGCGcgGCCg--GCGc -3' miRNA: 3'- -GGUGGACUGCC------------UCUUGU--UGGagaUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 43002 | 0.71 | 0.895432 |
Target: 5'- -aACUUGGCGGAGAggAUGGCCUC-GCGc -3' miRNA: 3'- ggUGGACUGCCUCU--UGUUGGAGaUGC- -5' |
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25637 | 3' | -51.3 | NC_005337.1 | + | 34427 | 0.71 | 0.902059 |
Target: 5'- aCCGCCUGGCGGGcGGcuuguCGGCCaugacgCUGCGc -3' miRNA: 3'- -GGUGGACUGCCU-CUu----GUUGGa-----GAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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