miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 45723 0.66 0.956645
Target:  5'- cACCGaGCGggCugGUgacggCGCCGUCu-- -3'
miRNA:   3'- -UGGUgCGCuaGugCAa----GCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 67039 0.66 0.956645
Target:  5'- gACCuuGcCGGUCAgCGUggcgagguagUCGCCGUcCAUGg -3'
miRNA:   3'- -UGGugC-GCUAGU-GCA----------AGCGGCA-GUAC- -5'
25637 5' -54 NC_005337.1 + 123613 0.66 0.952684
Target:  5'- uGCCGCGC--UCGCGggUGCUGacgcUCGUGg -3'
miRNA:   3'- -UGGUGCGcuAGUGCaaGCGGC----AGUAC- -5'
25637 5' -54 NC_005337.1 + 132826 0.66 0.952684
Target:  5'- uCCGCGaCGuUCACGUgcacgaUCGCCGgCAUa -3'
miRNA:   3'- uGGUGC-GCuAGUGCA------AGCGGCaGUAc -5'
25637 5' -54 NC_005337.1 + 105098 0.66 0.952684
Target:  5'- aACCucUGCGGUCGCGcggCGCCG-CGUu -3'
miRNA:   3'- -UGGu-GCGCUAGUGCaa-GCGGCaGUAc -5'
25637 5' -54 NC_005337.1 + 82091 0.66 0.952684
Target:  5'- --gACGCGGUCGgcCGUcugcgCGCCGUCGa- -3'
miRNA:   3'- uggUGCGCUAGU--GCAa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 90837 0.66 0.952684
Target:  5'- cACCGCGgGGUgC-CGcUCGCCGUCc-- -3'
miRNA:   3'- -UGGUGCgCUA-GuGCaAGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 51648 0.66 0.952684
Target:  5'- cGCUcCGCGGUCGCcagcgccCGCCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGcaa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 69406 0.66 0.951449
Target:  5'- -gCACGCGAUCGCGgacaugugcgccuucCGCuCGUCcgGc -3'
miRNA:   3'- ugGUGCGCUAGUGCaa-------------GCG-GCAGuaC- -5'
25637 5' -54 NC_005337.1 + 90403 0.66 0.948486
Target:  5'- -gCGCGuCGcgCACGUUCGUgGcCGUGa -3'
miRNA:   3'- ugGUGC-GCuaGUGCAAGCGgCaGUAC- -5'
25637 5' -54 NC_005337.1 + 30251 0.66 0.948486
Target:  5'- uCCGCGCGAUgGCG-UCGCCc----- -3'
miRNA:   3'- uGGUGCGCUAgUGCaAGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 34231 0.66 0.948486
Target:  5'- gACCACGCG--CACGgUC-CCGUCGa- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaAGcGGCAGUac -5'
25637 5' -54 NC_005337.1 + 17047 0.66 0.948486
Target:  5'- uCCGCGCGGUCugcACGUUcCGCUGgaugcgCAUc -3'
miRNA:   3'- uGGUGCGCUAG---UGCAA-GCGGCa-----GUAc -5'
25637 5' -54 NC_005337.1 + 38894 0.66 0.944048
Target:  5'- uUCGCGCGcGUCGCGcg-GCCGUCGc- -3'
miRNA:   3'- uGGUGCGC-UAGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 90387 0.66 0.944048
Target:  5'- gGCCGCGCGugcacaucaccAUCuccGCGUccaCGCCGUCGc- -3'
miRNA:   3'- -UGGUGCGC-----------UAG---UGCAa--GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 93774 0.66 0.944048
Target:  5'- cACCACGCac-CACGUgaUCGCUGUUg-- -3'
miRNA:   3'- -UGGUGCGcuaGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 112137 0.66 0.943591
Target:  5'- uCCugGCGGUCguuguccGCGUacUCGCCGcCGa- -3'
miRNA:   3'- uGGugCGCUAG-------UGCA--AGCGGCaGUac -5'
25637 5' -54 NC_005337.1 + 59796 0.66 0.939369
Target:  5'- -gCACGCGAcCACGag-GCCGUCGg- -3'
miRNA:   3'- ugGUGCGCUaGUGCaagCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 38482 0.66 0.939369
Target:  5'- cGCCGgGCGcgCGCG-UCGCCGa---- -3'
miRNA:   3'- -UGGUgCGCuaGUGCaAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 25106 0.66 0.939369
Target:  5'- cCCGCGCGG-CGCGgcgCGCgCGgacgCGUGa -3'
miRNA:   3'- uGGUGCGCUaGUGCaa-GCG-GCa---GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.