miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25637 5' -54 NC_005337.1 + 63005 0.66 0.939369
Target:  5'- cGCCACGCGGcgCAUGagcgCGuuGUCGa- -3'
miRNA:   3'- -UGGUGCGCUa-GUGCaa--GCggCAGUac -5'
25637 5' -54 NC_005337.1 + 34231 0.66 0.948486
Target:  5'- gACCACGCG--CACGgUC-CCGUCGa- -3'
miRNA:   3'- -UGGUGCGCuaGUGCaAGcGGCAGUac -5'
25637 5' -54 NC_005337.1 + 30251 0.66 0.948486
Target:  5'- uCCGCGCGAUgGCG-UCGCCc----- -3'
miRNA:   3'- uGGUGCGCUAgUGCaAGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 82091 0.66 0.952684
Target:  5'- --gACGCGGUCGgcCGUcugcgCGCCGUCGa- -3'
miRNA:   3'- uggUGCGCUAGU--GCAa----GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 93948 0.67 0.923857
Target:  5'- uCUACGUGuUCGCGUucUCGCUGUCc-- -3'
miRNA:   3'- uGGUGCGCuAGUGCA--AGCGGCAGuac -5'
25637 5' -54 NC_005337.1 + 2868 0.67 0.932919
Target:  5'- aGCCGCGCgccagcgggaacacGAUCACGgcccCGCgGUCGa- -3'
miRNA:   3'- -UGGUGCG--------------CUAGUGCaa--GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 84990 0.67 0.923857
Target:  5'- uCCGCcCGggCGCGUUCGCCGa---- -3'
miRNA:   3'- uGGUGcGCuaGUGCAAGCGGCaguac -5'
25637 5' -54 NC_005337.1 + 94806 0.67 0.929273
Target:  5'- gACCugGCGAgCACGUcCGCCa----- -3'
miRNA:   3'- -UGGugCGCUaGUGCAaGCGGcaguac -5'
25637 5' -54 NC_005337.1 + 38358 0.67 0.90613
Target:  5'- cGCgAgGCGcgCGCGgcCGCCGUCGc- -3'
miRNA:   3'- -UGgUgCGCuaGUGCaaGCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 83530 0.67 0.90613
Target:  5'- cGCC-CGCGAUCACGagcaUCGUcuCGUCGc- -3'
miRNA:   3'- -UGGuGCGCUAGUGCa---AGCG--GCAGUac -5'
25637 5' -54 NC_005337.1 + 109081 0.67 0.926053
Target:  5'- cCCGCGCGAugccgcuggagugguUCACGcUCaGCCG-CGUGc -3'
miRNA:   3'- uGGUGCGCU---------------AGUGCaAG-CGGCaGUAC- -5'
25637 5' -54 NC_005337.1 + 106038 0.67 0.934444
Target:  5'- uGCCGCGCGAcgGCGUUuCGgUGaUCGUGu -3'
miRNA:   3'- -UGGUGCGCUagUGCAA-GCgGC-AGUAC- -5'
25637 5' -54 NC_005337.1 + 65716 0.67 0.912284
Target:  5'- -gCACGCGGUggggCGCGcccggCGCCGUCAc- -3'
miRNA:   3'- ugGUGCGCUA----GUGCaa---GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 88518 0.67 0.923857
Target:  5'- cGCCGCGCGGUaCGaacgcggggcCGUgcuagacggCGCCGUCAc- -3'
miRNA:   3'- -UGGUGCGCUA-GU----------GCAa--------GCGGCAGUac -5'
25637 5' -54 NC_005337.1 + 70157 0.67 0.934444
Target:  5'- cGCCAUGCGc-CGCGUgagccagGCCGUCGUc -3'
miRNA:   3'- -UGGUGCGCuaGUGCAag-----CGGCAGUAc -5'
25637 5' -54 NC_005337.1 + 60163 0.67 0.929273
Target:  5'- uACCACcCGGUCACGUggaucaCGUgGUCAc- -3'
miRNA:   3'- -UGGUGcGCUAGUGCAa-----GCGgCAGUac -5'
25637 5' -54 NC_005337.1 + 108845 0.67 0.918193
Target:  5'- -gCGCGCGG--GCGacaCGCCGUCGUGc -3'
miRNA:   3'- ugGUGCGCUagUGCaa-GCGGCAGUAC- -5'
25637 5' -54 NC_005337.1 + 83616 0.67 0.917613
Target:  5'- uCCACGCGAuccacagcgcuggUCGCGUUgcUGCUGUCcauUGa -3'
miRNA:   3'- uGGUGCGCU-------------AGUGCAA--GCGGCAGu--AC- -5'
25637 5' -54 NC_005337.1 + 88952 0.67 0.912284
Target:  5'- gACCGCGCGGagGCGgagggCGCgGUCccGg -3'
miRNA:   3'- -UGGUGCGCUagUGCaa---GCGgCAGuaC- -5'
25637 5' -54 NC_005337.1 + 84664 0.67 0.934444
Target:  5'- uCCGCGUGAUCugG-UCGUCGgacggggcCGUGu -3'
miRNA:   3'- uGGUGCGCUAGugCaAGCGGCa-------GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.